1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGCCAATGTACACAACGCTCCGGCGAACGACAGTCTTGTTCACAATGGCAATGGAGTACGCCATCATGGGACAGAGGCATTCGAGAGAAGTGATTTGCAGgtttgtctctaagatctcgcaagatagagaaaggaaaaactttaagaacttttgcctctttctttttgcag
species | Selaginella moellendorffii |
transcript | EFJ34914 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATGGAGTACGCCATCATGGGACAGAGGCATTCGAGAGAAGTGATTTGCAG CGTGGGAGTTATAGTCTTTGGAGCGTTTCTAGCTGGAGCCAGAGACTTCTCEST: gi|169061879|gb|FE470173.1|FE470173
genomic: ATGGAGTACGCCATCATGGGACAGAGGCATTCGAGAGAAGTGATTTGCAGgtttgtctct ... ctttttgcagCGTGGGAGTTATAGTCTTTGGAGCGTTTCTAGCTGGAGCCAGAGACTTCTC
EST: ATGGAGTACGCCATCATGGGACAGAGGCATTCGAGAGAAGTGATTTGCAG CGTGGGAGTTATAGTCTTTGGAGCGTTTCTAGCTGGAGCCAGAGACTTCTCEST: gi|169061878|gb|FE470172.1|FE470172
genomic: ATGGAGTACGCCATCATGGGACAGAGGCATTCGAGAGAAGTGATTTGCAGgtttgtctct ... ctttttgcagCGTGGGAGTTATAGTCTTTGGAGCGTTTCTAGCTGGAGCCAGAGACTTCTC
EST: ATGGAGTACGCCATCATGGGACAGAGGCATTCGAGAGAAGTGATTTGCAG CGTGGGAGTTATAGTCTTTGGAGCGTTTCTAGCTGGAGCCAGAGACTTCTC
genomic: ATGGAGTACGCCATCATGGGACAGAGGCATTCGAGAGAAGTGATTTGCAGgtttgtctct ... ctttttgcagCGTGGGAGTTATAGTCTTTGGAGCGTTTCTAGCTGGAGCCAGAGACTTCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCCAATGTACACAACGCTCCGGCGAACGACAGTCTTGTTCACAATGGCAATGGAGTACGCCATCATGGGACAGAGGCATTCGAGAGAAGTGATTTGCAGgtttgtctctaagatctcgcaagatagagaaaggaaaaactttaagaacttttgcctctttctttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT