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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTTGGACAACCTTCCTGTAGCTATCGCTGCACCTGGTAACATGGACGGCAGTCATCTCAAACTTTACGAGCGAGGTTTTCCTGTAGGATTCAAGgttagtaccagatttcgtttttttctttttttcccttctttctttctaaactctagtgaccttaaaaaattcgcag

Basic information

species Selaginella moellendorffii
transcript EFJ33415
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169018854|gb|FE427039.1|FE427039
EST:     ACGGCAGTCATCTCAAACTTTACGAGCGAGGTTTTCCTGTAGGATTCAAG                         AGTGATGATGGGAAGTATAACCTTTACAACCACCTCAAGTTTACGGTTTAT
genomic: ACGGCAGTCATCTCAAACTTTACGAGCGAGGTTTTCCTGTAGGATTCAAGgttagtacca ... aaattcgcagAGTGATGATGGGAAGTATAACCTTTACAACCACCTCAAGTTTACGGTTTAT
EST: gi|169075702|gb|FE481776.1|FE481776
EST:     ACGGCAGTCATCTCAAACTTTACGAGCGAGGTTTTCCTGTAGGATTCAAG                         AGTGATGATGGGAAGTATAACCTTTACAACCACCTCAAGTTTACGGTTTAT
genomic: ACGGCAGTCATCTCAAACTTTACGAGCGAGGTTTTCCTGTAGGATTCAAGgttagtacca ... aaattcgcagAGTGATGATGGGAAGTATAACCTTTACAACCACCTCAAGTTTACGGTTTAT
EST: gi|169115215|gb|FE516970.1|FE516970
EST:     ACGGCAGTCATCTCAAACTTTACGAGCGAGGTTTTCCTGTAGGATTCAAG                         AGTGATGATGGGAAGTATAACCTTTACAACCACCTCAAGTTTACGGTTTAT
genomic: ACGGCAGTCATCTCAAACTTTACGAGCGAGGTTTTCCTGTAGGATTCAAGgttagtacca ... aaattcgcagAGTGATGATGGGAAGTATAACCTTTACAACCACCTCAAGTTTACGGTTTAT
EST: gi|169029206|gb|FE439711.1|FE439711
EST:     ACGGCAGTCATCTCAAACTTTACGAGCGAGGTTTTCCTGTAGGATTCAAG                         AGTGATGATGGGAAGTATAACCTTTACAACCACCTCAAGTTTACGGTTTAT
genomic: ACGGCAGTCATCTCAAACTTTACGAGCGAGGTTTTCCTGTAGGATTCAAGgttagtacca ... aaattcgcagAGTGATGATGGGAAGTATAACCTTTACAACCACCTCAAGTTTACGGTTTAT
EST: gi|169024527|gb|FE436285.1|FE436285
EST:     ACGGCAGTCATCTCAAACTTTACGAGCGAGGTTTTCCTGTAGGATTCAAG                         AGTGATGATGGGAAGTATAACCTTTACAACCACCTCAAGTTTACGGTTTAT
genomic: ACGGCAGTCATCTCAAACTTTACGAGCGAGGTTTTCCTGTAGGATTCAAGgttagtacca ... aaattcgcagAGTGATGATGGGAAGTATAACCTTTACAACCACCTCAAGTTTACGGTTTAT
EST: gi|169025118|gb|FE434705.1|FE434705
EST:     ACGGCAGTCATCTCAAACTTTACGAGCGAGGTTTTCCTGTAGGATTCAAG                         AGTGATGATGGGAAGTATAACCTTTACAACCACCTCAAGTTTACGGTTTAT
genomic: ACGGCAGTCATCTCAAACTTTACGAGCGAGGTTTTCCTGTAGGATTCAAGgttagtacca ... aaattcgcagAGTGATGATGGGAAGTATAACCTTTACAACCACCTCAAGTTTACGGTTTAT
EST: gi|169041649|gb|FE448232.1|FE448232
EST:     ACGGCAGTCATCTCAAACTTTACGAGCGAGGTTTTCCTGTAGGATTCAAG                         AGTGATGATGGGAAGTATAACCTTTACAACCACCTCAAGTTTACGGTTTAT
genomic: ACGGCAGTCATCTCAAACTTTACGAGCGAGGTTTTCCTGTAGGATTCAAGgttagtacca ... aaattcgcagAGTGATGATGGGAAGTATAACCTTTACAACCACCTCAAGTTTACGGTTTAT
EST: gi|169031680|gb|FE437481.1|FE437481
EST:     ACGGCAGTCATCTCAAACTTTACGAGCGAGGTTTTCCTGTAGGATTCAAG                         AGTGATGATGGGAAGTATAACCTTTACAACCACCTCAAGTTTACGGTTTAT
genomic: ACGGCAGTCATCTCAAACTTTACGAGCGAGGTTTTCCTGTAGGATTCAAGgttagtacca ... aaattcgcagAGTGATGATGGGAAGTATAACCTTTACAACCACCTCAAGTTTACGGTTTAT
EST: gi|169029116|gb|FE439374.1|FE439374
EST:     ACGGCAGTCATCTCAAACTTTACGAGCGAGGTTTTCCTGTAGGATTCAAG                         AGTGATGATGGGAAGTATAACCTTTACAACCACCTCAAGTTTACGGTTTAT
genomic: ACGGCAGTCATCTCAAACTTTACGAGCGAGGTTTTCCTGTAGGATTCAAGgttagtacca ... aaattcgcagAGTGATGATGGGAAGTATAACCTTTACAACCACCTCAAGTTTACGGTTTAT
EST: gi|169087552|gb|FE494643.1|FE494643
EST:     ACGGCAGTCATCTCAAACTTTACGAGCGAGGTTTTCCTGTAGGATTCAAG                         AGTGATGATGGGAAGTATAACCTTTACAACCACCTCAAGTTTACGGTTTAT
genomic: ACGGCAGTCATCTCAAACTTTACGAGCGAGGTTTTCCTGTAGGATTCAAGgttagtacca ... aaattcgcagAGTGATGATGGGAAGTATAACCTTTACAACCACCTCAAGTTTACGGTTTAT
EST: gi|169095949|gb|FE497301.1|FE497301
EST:     ACGGCAGTCATCTCAAACTTTACGAGCGAGGTTTTCCTGTAGGATTCAAG                         AGTGATGATGGGAAGTATAACCTTTACAACCACCTCAAGTTTACGGTTTAT
genomic: ACGGCAGTCATCTCAAACTTTACGAGCGAGGTTTTCCTGTAGGATTCAAGgttagtacca ... aaattcgcagAGTGATGATGGGAAGTATAACCTTTACAACCACCTCAAGTTTACGGTTTAT
EST: gi|169081742|gb|FE488200.1|FE488200
EST:     ACGGCAGTCATCTCAAACTTTACGAGCGAGGTTTTCCTGTAGGATTCAAG                         AGTGATGATGGGAAGTATAACCTTTACAACCACCTCAAGTTTACGGTTTAT
genomic: ACGGCAGTCATCTCAAACTTTACGAGCGAGGTTTTCCTGTAGGATTCAAGgttagtacca ... aaattcgcagAGTGATGATGGGAAGTATAACCTTTACAACCACCTCAAGTTTACGGTTTAT
EST: gi|169031898|gb|FE440650.1|FE440650
EST:     ACGGCAGTCATCTCAAACTTTACGAGCGAGGTTTTCCTGTAGGATTCAAG                         AGTGATGATGGGAAGTATAACCTTTACAACCACCTCAAGTTTACGGTTTAT
genomic: ACGGCAGTCATCTCAAACTTTACGAGCGAGGTTTTCCTGTAGGATTCAAGgttagtacca ... aaattcgcagAGTGATGATGGGAAGTATAACCTTTACAACCACCTCAAGTTTACGGTTTAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 36

GATTTTGGACAACCTTCCTGTAGCTATCGCTGCACCTGGTAACATGGACGGCAGTCATCTCAAACTTTACGAGCGAGGTTTTCCTGTAGGATTCAAGgttagtacca ... aaattcgcagAGTGATGATGGGAAGTATAACCTTTACAACCACCTCAAGTTTACGGTTTATTTTCACAAGGATCAGGATCCGGATGTCTCTCGCATCGTGGGCTTTGAGG




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