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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGCAGGTGTCCAAATCTGGTTCCTCGCGATCATTTACATGCTAGCTGGAATTCCCGGATCGTATGGACTGTGGTATCGACCTCTGTACAATGCAATGAGgtattgtgtgtcactctcacgggacgtttcttcagctcgtttgcttttccag

Basic information

species Selaginella moellendorffii
transcript EFJ29726
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ29726 (Selaginella moellendorffii), 5'ss of exon 4
lower sequence: LOC_Os07g37740.1 (Oryza sativa), 5'ss of exon 8
CCGCAGGTGTCCAAATCTGGTTCCTCGCGATCATTTACATGCTAGCTGGAATTCCCGGATCGTATGGACTGTGGTATCGACCTCTGTACAATGCAATGAGgtattgtgt--gtcactctcacgggacgtttcttcagctcgtttgcttttccag-----------------------
      | ||  | || ||||| || || ||||| ||| |  |  ||||  |||| ||  | ||||   | ||||||||||||||||| ||||| |||||||||||| |  |  |   || | |  | ||||||  |    |  |    |                           
------GCGTGAAGATATGGTTGCTGGCAATCATCTACTTCATCTCTGGGGTTCCTGGTGCATATGTTTTATGGTATCGACCTCTGTATAATGCTATGAGgtattgtttctgcgaacttctccgtgcttttcttgtgtatatgagtaagtaacatttattggacacttgttttgtag

upper sequence: EFJ29726 (Selaginella moellendorffii), 5'ss of exon 4
lower sequence: GRMZM2G448715_T02 (Zea mays), 5'ss of exon 8
CCGCAGGTGTCCAAATCTGGTTCCTCGCGATCATTTACATGCTAGCTGGAATTCCCGGATCGTATGGACTGTGGTATCGACCTCTGTACAATGCAATGAGgtattgtgtgtcac-tctcacgggacgtttcttcagct----cgtttgcttttccag---------------------------------------
      ||||  | ||||||||  | || || |||||| |  || ||||  |||| ||  | ||||   |||||||||| |||||||| |||||||||||||| | | | | |  |||||    |   || |    ||    | | |   |||  |                                        
------GTGTTAAGATCTGGTTATTGGCAATAATTTACTTCATATCTGGTGTTCCTGGTGCATATGTTTTGTGGTATCGTCCTCTGTATAATGCAATGAGgtaatttatttgaaatctcatcacattattttgtgcctctaccatatatctttgtatgcatggataggtaatgtttactggcaacttgttttgtag