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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAACTTGAAGTATATGGGAATTGATGCCCTGGGTCGGCTTATCAAAATTACGCCAGAGTGTGCCGAAAATCATCAACTGGCTGTCATTGACTGCTTAGAGgtagcgtctctattcctatttattgaaggatcgcctttcagtgcgaactcttgtag

Basic information

species Selaginella moellendorffii
transcript EFJ29441
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ29441 (Selaginella moellendorffii), 5'ss of exon 4
lower sequence: GLYMA16G20260.1 (Glycine max), 5'ss of exon 3
TAACTTGAAGTATATGGGAATTGATGCCCTGGGTCGGCTTATCAAAATTACGCCAGAGTGTGCCGAAAATCATCAACTGGCTGTCATTGACTGCTTAGAGgt-agcgtctctat-tcctatttattgaag------gatcgcctttcagtgcgaactcttgtag------------------------------------
|||  | ||||| ||||| |||||||| || |||||||| || || || |  ||| |   ||| ||| | |||||||||||||||||||||||||||||||| ||  ||||| | || |   |  |||||      ||| |        |||  |  || ||                                      
TAATCTTAAGTACATGGGCATTGATGCGCTTGGTCGGCTGATAAAGATAAGTCCACATGTTGCAGAACAGCATCAACTGGCTGTCATTGACTGCTTAGAGgtgaggatctctttgtcttgaatgctgaagagttaagatggatggcttttgcatagcctggtttcgattttggtcttataaattgttgtatgtttgttcc

upper sequence: EFJ29441 (Selaginella moellendorffii), 5'ss of exon 4
lower sequence: GLYMA16G08320.1 (Glycine max), 5'ss of exon 3
TAACTTGAAGTATATGGGAATTGATGCCCTGGGTCGGCTTATCAAAATTACGCCAGAGTGTGCCGAAAATCATCAACTGGCTGTCATTGACTGCTTAGAGgt-agcgtctctat-tcctatttattgaaggatcgcctttcagtgcgaactcttgtag--------------------------------------------
|||  | ||||| ||||| |||||||| || |||||||| || || || |  ||| |   ||| ||| | |||||||||||||||||||||||||||||||| ||  ||||| | || |   |  | |||  |     |   |   |   |   ||||                                            
TAATCTCAAGTACATGGGCATTGATGCGCTTGGTCGGCTGATAAAGATAAGTCCACATGTTGCAGAACAGCATCAACTGGCTGTCATTGACTGCTTAGAGgtgaggatctctttgtcttgaatgcttaagagttaagat--ggatgggttttgcgtagccaggtttcgatttaaattattgtatgtttgttcccctttatgt