1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGGACGACTTCACGCCTAAAGTCTCCGACTTTGGCCTCGCCAAAGCAGCCTCGGAAGAACTAACTGGACATATTTCAACGAGAGTCATGGGAACTTTCGGgtacgttttctccatctttttttttgtcttatctcatgtgttcttttctctccag
species | Selaginella moellendorffii |
transcript | EFJ23539 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCGGAAGAACTAACTGGACATATTTCAACGAGAGTCATGGGAACTTTCGG TTATGTGGCACCCGAGTACGCCATGACCGGTCACCTTCTTTGTTA-GAGCGEST: gi|169102418|gb|FE505849.1|FE505849
genomic: TCGGAAGAACTAACTGGACATATTTCAACGAGAGTCATGGGAACTTTCGGgtacgttttc ... ttctctccagTTATGTGGCACCCGAGTACGCCATGACCGGTCACCTTCTT-GTTAAGAGCG
EST: TCGGAAGAACTAACTGGACATATTTCAACGAGAGTCATGGGAACTTTCGG TTATGTGGCACCCGAGTACGCCATGACCGGTCACCTTCTTGTTAAGAGCGAEST: gi|169044540|gb|FE450605.1|FE450605
genomic: TCGGAAGAACTAACTGGACATATTTCAACGAGAGTCATGGGAACTTTCGGgtacgttttc ... ttctctccagTTATGTGGCACCCGAGTACGCCATGACCGGTCACCTTCTTGTTAAGAGCGA
EST: TCGGAAGAACTAACTGGACATATTTCAACGAGAGTCATGGGAACTTTCGG TTATGTGGCACCCGAGTACGCCATGACCGGTCACCTTCTTGTTAAGAGCGAEST: gi|169018879|gb|FE427064.1|FE427064
genomic: TCGGAAGAACTAACTGGACATATTTCAACGAGAGTCATGGGAACTTTCGGgtacgttttc ... ttctctccagTTATGTGGCACCCGAGTACGCCATGACCGGTCACCTTCTTGTTAAGAGCGA
EST: TCGGAAGAACTAACTGGACATATTTCAACGAGAGTCATGGGAACTTTCGG TTATGTGGCACCCGAGTACGCCATGACCGGTCACCTTCTTGTTAAGAGCGAEST: gi|169023400|gb|FE430050.1|FE430050
genomic: TCGGAAGAACTAACTGGACATATTTCAACGAGAGTCATGGGAACTTTCGGgtacgttttc ... ttctctccagTTATGTGGCACCCGAGTACGCCATGACCGGTCACCTTCTTGTTAAGAGCGA
EST: TCGGAAGAACTAACTGGACATATTTCAACGAGAGTCATGGGAACTTTCGG TTATGTGGCACCCGAGTACGCCATGACCGGTCACCTTCTTGTTAAGAGCGAEST: gi|169031382|gb|FE437714.1|FE437714
genomic: TCGGAAGAACTAACTGGACATATTTCAACGAGAGTCATGGGAACTTTCGGgtacgttttc ... ttctctccagTTATGTGGCACCCGAGTACGCCATGACCGGTCACCTTCTTGTTAAGAGCGA
EST: TCGGAAGAACTAACTGGACATATTTCAACGAGAGTCATGGGAACTTTCGG TTATGTGGCACCCGAGTACGCCATGACCGGTCACCTTCTTGTTAAGAGCGA
genomic: TCGGAAGAACTAACTGGACATATTTCAACGAGAGTCATGGGAACTTTCGGgtacgttttc ... ttctctccagTTATGTGGCACCCGAGTACGCCATGACCGGTCACCTTCTTGTTAAGAGCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGACGACTTCACGCCTAAAGTCTCCGACTTTGGCCTCGCCAAAGCAGCCTCGGAAGAACTAACTGGACATATTTCAACGAGAGTCATGGGAACTTTCGGgtacgttttctccatctttttttttgtcttatctcatgtgttcttttctctccag
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC