1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
TTCTAAGCTGGGAAAGATTCAATTTTCTGATTCTCAGGCTGCAGTACAGGATGCTCAGGCGGACGATTTGCGACAGATGTTTCTTGCAATGACAGAGGAGgttctgtacttgatttttttaaatctttgtcatctcatcactgcctttatttattttag
species | Selaginella moellendorffii |
transcript | EFJ23048 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTTTCTTGCAATGACAGAGGAG GTGCGCGTGATCGTTGTGAAGCTTGCTGACAGACTGCACAATATGCGCACGEST: gi|169021634|gb|FE428851.1|FE428851
genomic: GTTTCTTGCAATGACAGAGGAGgttctgtact ... tttattttagGTGCGCGTGATCGTTGTGAAGCTTGCTGACAGACTGCACAATATGCGCACG
EST: ATGCTCAGGCGGACGATTTGCGACAGATGTTTCTTGCAATGACAGAGGAG GTGCGCGTGATCGTTGTGAAGCTTGCTGACAGACTGCACAATATGCGCACGEST: gi|169020542|gb|FE429800.1|FE429800
genomic: ATGCTCAGGCGGACGATTTGCGACAGATGTTTCTTGCAATGACAGAGGAGgttctgtact ... tttattttagGTGCGCGTGATCGTTGTGAAGCTTGCTGACAGACTGCACAATATGCGCACG
EST: ATGCTCAGGCGGACGATTTGCGACAGATGTTTCTTGCAATGACAGAGGAG GTGCGCGTGATCGTTGTGAAGCTTGCTGACAGACTGCACAATATGCGCACGEST: gi|169028084|gb|FE435429.1|FE435429
genomic: ATGCTCAGGCGGACGATTTGCGACAGATGTTTCTTGCAATGACAGAGGAGgttctgtact ... tttattttagGTGCGCGTGATCGTTGTGAAGCTTGCTGACAGACTGCACAATATGCGCACG
EST: ATGCTCAGGCGGACGATTTGCGACAGATGTTTCTTGCAATGACAGAGGAG GTGCGCGTGATCGTTGTGAAGCTTGCTGACAGACTGCACAATATGCGCACG
genomic: ATGCTCAGGCGGACGATTTGCGACAGATGTTTCTTGCAATGACAGAGGAGgttctgtact ... tttattttagGTGCGCGTGATCGTTGTGAAGCTTGCTGACAGACTGCACAATATGCGCACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTAAGCTGGGAAAGATTCAATTTTCTGATTCTCAGGCTGCAGTACAGGATGCTCAGGCGGACGATTTGCGACAGATGTTTCTTGCAATGACAGAGGAGgttctgtacttgatttttttaaatctttgtcatctcatcactgcctttatttattttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG