1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CATAGAGGAAGGGAACTTCCCGGCCTGGAAGTTCTGCGTCCAAGTCATGCCGCTGGAGGACGCTCCAAAGTATAAGTGGGATCCTTTCGACTTGACAAAGgtatgtgacacaagttttcttcttcttctgtttttcaaggacgtggatttcag
species | Selaginella moellendorffii |
transcript | EFJ21541 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CGCTGGAGGACGCTCCAAAGTATAAGTGGGATCCTTTCGACTTGACAAAG GTGTGGTTGCACAAGGATTATCCCCTCATGGAAGTTGGCAGGCTCGTTCTCEST: gi|169078635|gb|FE487067.1|FE487067
genomic: CGCTGGAGGACGCTCCAAAGTATAAGTGGGATCCTTTCGACTTGACAAAGgtatgtgaca ... tggatttcagGTGTGGTTGCACAAGGATTATCCCCTCATGGAAGTTGGCAGGCTCGTTCTC
EST: CGCTGGAGGACGCTCCAAAGTATAAGTGGGATCCTTTCGACTTGACAAAG GTGTGGTTGCACAAGGATTATCCCCTCATGGAAGTTGGCAGGCTCGTTCTCEST: gi|169061632|gb|FE469419.1|FE469419
genomic: CGCTGGAGGACGCTCCAAAGTATAAGTGGGATCCTTTCGACTTGACAAAGgtatgtgaca ... tggatttcagGTGTGGTTGCACAAGGATTATCCCCTCATGGAAGTTGGCAGGCTCGTTCTC
EST: CGCTGGAGGACGCTCCAAAGTATAAGTGGGATCCTTTCGACTTGACAAAG GTGTGGTTGCACAAGGATTATCCCCTCATGGAAGTTGGCAGGCTCGTTCTCEST: gi|169100939|gb|FE500891.1|FE500891
genomic: CGCTGGAGGACGCTCCAAAGTATAAGTGGGATCCTTTCGACTTGACAAAGgtatgtgaca ... tggatttcagGTGTGGTTGCACAAGGATTATCCCCTCATGGAAGTTGGCAGGCTCGTTCTC
EST: CGCTGGAGGACGCTCCAAAGTATAAGTGGGATCCTTTCGACTTGACAAAG GTGTGGTTGCACAAGGATTATCCCCTCATGGAAGTTGGCAGGCTCGTTCTCEST: gi|169018436|gb|FE427245.1|FE427245
genomic: CGCTGGAGGACGCTCCAAAGTATAAGTGGGATCCTTTCGACTTGACAAAGgtatgtgaca ... tggatttcagGTGTGGTTGCACAAGGATTATCCCCTCATGGAAGTTGGCAGGCTCGTTCTC
EST: CGCTGGAGGACGCTCCAAAGTATAAGTGGGATCCTTTCGACTTGACAAAG GTGTGGTTGCACAAGGATTATCCCCTCATGGAAGTTGGCAGGCTCGTTCTCEST: gi|169033315|gb|FE441733.1|FE441733
genomic: CGCTGGAGGACGCTCCAAAGTATAAGTGGGATCCTTTCGACTTGACAAAGgtatgtgaca ... tggatttcagGTGTGGTTGCACAAGGATTATCCCCTCATGGAAGTTGGCAGGCTCGTTCTC
EST: CGCTGGAGGACGCTCCAAAGTATAAGTGGGATCCTTTCGACTTGACAAAG GTGTGGTTGCACAAGGATTATCCCCTCATGGAAGTTGGCAGGCTCGTTCTCEST: gi|169095389|gb|FE497495.1|FE497495
genomic: CGCTGGAGGACGCTCCAAAGTATAAGTGGGATCCTTTCGACTTGACAAAGgtatgtgaca ... tggatttcagGTGTGGTTGCACAAGGATTATCCCCTCATGGAAGTTGGCAGGCTCGTTCTC
EST: CGCTGGAGGACGCTCCAAAGTATAAGTGGGATCCTTTCGACTTGACAAAG GTGTGGTTGCACAAGGATTATCNCCTCATGGAAGTTGGCAGGCTCGTTCTCEST: gi|169086910|gb|FE495119.1|FE495119
genomic: CGCTGGAGGACGCTCCAAAGTATAAGTGGGATCCTTTCGACTTGACAAAGgtatgtgaca ... tggatttcagGTGTGGTTGCACAAGGATTATCCCCTCATGGAAGTTGGCAGGCTCGTTCTC
EST: CGCTGGAGGACGCTCCAAAGTATAAGTGGGATCCTTTCGACTTGACAAAG GTGTGGTTGCACAAGGATTATCCCCTCATGGAAGTTGGCAGGCTCGTTCTCEST: gi|169061633|gb|FE469420.1|FE469420
genomic: CGCTGGAGGACGCTCCAAAGTATAAGTGGGATCCTTTCGACTTGACAAAGgtatgtgaca ... tggatttcagGTGTGGTTGCACAAGGATTATCCCCTCATGGAAGTTGGCAGGCTCGTTCTC
EST: GCTGGAGGACGCTCCAAAGTATAAGTGGGATCCTTTCGACTTTGACAA-G GTGTGGGTGCACA-GGATTATEST: gi|169052855|gb|FE461220.1|FE461220
genomic: GCTGGAGGACGCTCCAAAGTATAAGTGGGATCCTTTCGACTT-GACAAAGgtatgtgaca ... tggatttcagGTGTGGTTGCACAAGGATTAT
EST: CGCTGGAGGACGCTCCAAAGTATAAGTGGGATCCTTTCGACTTGACAAAG GTGTGGTTGCACAAGGATTATCCCCTCATGGAAGTTGGCAGGCTCGTTCTC
genomic: CGCTGGAGGACGCTCCAAAGTATAAGTGGGATCCTTTCGACTTGACAAAGgtatgtgaca ... tggatttcagGTGTGGTTGCACAAGGATTATCCCCTCATGGAAGTTGGCAGGCTCGTTCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATAGAGGAAGGGAACTTCCCGGCCTGGAAGTTCTGCGTCCAAGTCATGCCGCTGGAGGACGCTCCAAAGTATAAGTGGGATCCTTTCGACTTGACAAAGgtatgtgacacaagttttcttcttcttctgtttttcaaggacgtggatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA