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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGCTATGTTTGCATCGTTACTGGATATTGTGAAGGGGgtgatatgtaagtcatttgaaccgtaagagggtgctcctttacgtctctatagagcactaaaatgagtttgatttcttgccagggccgagatgatcagaagatccaacggaacgttctttcctgaag

Basic information

species Selaginella moellendorffii
transcript EFJ20709
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ20709 (Selaginella moellendorffii), 5'ss of exon 4
lower sequence: LOC_Os01g64490.1 (Oryza sativa), 5'ss of exon 5
GGATGCTATGTTTGCATCGTTACTGGATATTGTGAAGGGGgtgatatgtaagt--catttgaaccgtaagagggtgctcctttacgtctctatagagcactaaaatgagtttgatttcttgccagggccgagatgatcagaagatccaacggaacgttctttcctgaag
|| ||||||||||||||||| || ||||| |||||||| |||||||||| |||   ||||     ||  | |  ||     ||| || |||      || |   |   |  ||   |||  | |  |        | |||                             
GGCTGCTATGTTTGCATCGTGACGGGATACTGTGAAGGTGGTGATATgtgagtgcgatttatttggttggggcctgggggatta-gtttctcggctacatttttagttgactgtcgtctcactatagtgttttctaacag-----------------------------

upper sequence: EFJ20709 (Selaginella moellendorffii), 5'ss of exon 4
lower sequence: GLYMA12G31330.1 (Glycine max), 5'ss of exon 4
GGATGCTATGTTTGCATCGTTACTGGATATTGTGAAGGGGgtgatatgtaagtcatttgaaccgtaagagggtgctcctttacgtctctatagagcactaaaatgagtttgatttcttgccagggccgagatgatcagaagatccaacggaacgttctttcctgaag----------
|| |||||||||||||| ||||||||||| |||||||| || || |||| |||   ||| |   ||   | |   |   | | |||    |       |||  |||  || ||   |||     | | |  |  | |  |  |      |   ||| | || | ||           
GGTTGCTATGTTTGCATTGTTACTGGATACTGTGAAGGTGGAGACATgtgagtgtattggataatacctgtgaagtg--tgaagtcctagtg------taatgtgaagttcatgggttgtgtatgtccaattacttactattttgttatgtttgttttctctttaaatacttaatag

upper sequence: EFJ20709 (Selaginella moellendorffii), 5'ss of exon 4
lower sequence: Vv06s0009g00690.t01 (Vitis vinifera), 5'ss of exon 4
GGATGCTATGTTTGCATCGTTACTGGATATTGTGAAGGGGgtgatatgtaagtcatttgaaccgtaagagggtgctcctttacgtctctatagagcactaaaatgagtttgatttcttgccagggccgagatgatcagaagatccaacggaacgttctttcctgaag
|| |||||||||||||| || ||||||||||||||||| || || |||| |||    || |    |||             | |    || |||||   ||| |   |||   |  ||   |   || | |   |    | ||           ||   |     ||
GGTTGCTATGTTTGCATTGTCACTGGATATTGTGAAGGAGGAGACATgtgagtttgctgta--aaaaggaaaaaaaaaaaaatgcagataaagagcttgaaacttcatttacatgattataat--ccaaaacattttttacattttttccttgcttacctttaacag

upper sequence: EFJ20709 (Selaginella moellendorffii), 5'ss of exon 4
lower sequence: PP1S22_216V6.1 (Physcomitrella patens), 5'ss of exon 4
GGATGCTATGTTTGCATCGTTACTGGATATTGTGAAGGGGgtgatatgtaagtcatttgaaccgtaagagggtgctcctttacgtctctatagagcactaaaatgagtttgatttcttgccagggccgagatgatcagaagatccaacggaacgttctttcctgaag
||||||||||| ||||||||||| || || |||||||| ||||| |||||||| |       | || |   ||   | || |    | | |||||   ||   |  |        |||| | |   |  | |   ||   |||    |||    ||           
GGATGCTATGTATGCATCGTTACAGGTTACTGTGAAGGTGGTGACATgtaagtgaaccttttc-tacggatgtcagctttca----tttttagagtcttagtgtcggaccag---cttgactgcatcatgtttcacatg-gatatgtcggtgtctt-----------