1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGATGATTGATCACGAGCAGCGCAAGCTGCGGCTCATCGACTGGGGCCTGGCAGAATTCTACCACCCCGGAAAGGAGTACAACGTTCGCGTTGCTTCAAGgtgtggaaaaggcgttgcttgaatgtgatctcaattccaataatttgtgtgctgtcgcttctcacgtcag
species | Selaginella moellendorffii |
transcript | EFJ20478 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCAGAATTCTACCACCCCGGAAAGGAGTACAACGTTCGCGTTGCTTCAAG ATACTTCAAAGGTCCGGAGCTGCTTGTGGACCTGCAGGACTACGATTACTCEST: gi|169057441|gb|FE465745.1|FE465745
genomic: GCAGAATTCTACCACCCCGGAAAGGAGTACAACGTTCGCGTTGCTTCAAGgtgtggaaaa ... ctcacgtcagATACTTCAAAGGTCCGGAGCTGCTTGTGGACCTGCAGGACTACGATTACTC
EST: GCAGAATTCTACCACCCCGGAAAGGAGTACAACGTTCGCGTTGCTTCAAG ATACTTCAAAGGTCCGGAGCTGCTTGTGGACCTGCAGGACTACGATTACTCEST: gi|169099874|gb|FE500879.1|FE500879
genomic: GCAGAATTCTACCACCCCGGAAAGGAGTACAACGTTCGCGTTGCTTCAAGgtgtggaaaa ... ctcacgtcagATACTTCAAAGGTCCGGAGCTGCTTGTGGACCTGCAGGACTACGATTACTC
EST: GCAGAATTCTACCACCCCGGAAAGGAGTACAACGTTCGCGTTGCTTCAAG ATACTTCAAAGGTCCGGAGCTGCTTGTGGACCTGCAGGACTACGATTACTCEST: gi|169054797|gb|FE460593.1|FE460593
genomic: GCAGAATTCTACCACCCCGGAAAGGAGTACAACGTTCGCGTTGCTTCAAGgtgtggaaaa ... ctcacgtcagATACTTCAAAGGTCCGGAGCTGCTTGTGGACCTGCAGGACTACGATTACTC
EST: GCAGAATTCTACCACCCCGGAAAGGAGTACAACGTTCGCGTTGCTTCAAG ATACTTCAAAGGTCCGGAGCTGCTTGTGGACCTGCAGGACTACGATTACTCEST: gi|169062160|gb|FE469700.1|FE469700
genomic: GCAGAATTCTACCACCCCGGAAAGGAGTACAACGTTCGCGTTGCTTCAAGgtgtggaaaa ... ctcacgtcagATACTTCAAAGGTCCGGAGCTGCTTGTGGACCTGCAGGACTACGATTACTC
EST: GCAGAATTCTACCACCCCGGAAAGGAGTACAACGTTCGCGTTGCTTCAAG ATACTTCAAAGGTCCGGAGCTGCTTGTGGACCTGCAGGACTACGATTACTCEST: gi|169040609|gb|FE449740.1|FE449740
genomic: GCAGAATTCTACCACCCCGGAAAGGAGTACAACGTTCGCGTTGCTTCAAGgtgtggaaaa ... ctcacgtcagATACTTCAAAGGTCCGGAGCTGCTTGTGGACCTGCAGGACTACGATTACTC
EST: GCAGAATTCTACCACCCCGGAAAGGAGTACAACGTTCGCGTTGCTTCA-G ATACTTCAA-GGTCCGGAGCTGCTTGTGGACCTGCAGGACTACGATTACTCEST: gi|169099662|gb|FE502643.1|FE502643
genomic: GCAGAATTCTACCACCCCGGAAAGGAGTACAACGTTCGCGTTGCTTCAAGgtgtggaaaa ... ctcacgtcagATACTTCAAAGGTCCGGAGCTGCTTGTGGACCTGCAGGACTACGATTACTC
EST: GCAGAATTCTACCACCCCGGAAAGGAGTACAACGTTCGCGTTGCTTCAAG ATACTTCAAAGGTCCGGAGCTGCTTGTGGACCTGCAGGACTACGATTACTCEST: gi|169040608|gb|FE449739.1|FE449739
genomic: GCAGAATTCTACCACCCCGGAAAGGAGTACAACGTTCGCGTTGCTTCAAGgtgtggaaaa ... ctcacgtcagATACTTCAAAGGTCCGGAGCTGCTTGTGGACCTGCAGGACTACGATTACTC
EST: GCAGAATTCTACCACCCCGGAAAGGAGTACAACGTTCGCGTTGCTTCAAG ATACTTCAAAGGTCCGGAGCTGCTTGTGGACCTGCAGGACTACGATTACTCEST: gi|169057442|gb|FE465746.1|FE465746
genomic: GCAGAATTCTACCACCCCGGAAAGGAGTACAACGTTCGCGTTGCTTCAAGgtgtggaaaa ... ctcacgtcagATACTTCAAAGGTCCGGAGCTGCTTGTGGACCTGCAGGACTACGATTACTC
EST: GCAGAATTCTACCACCCCGGAAAGGAGTACAACGTTCGCGTTGCTTCAAG ATACTTCAAAGGTCCGGAGCTGCTTGTGGACCTGCAGGACTACGATTACTC
genomic: GCAGAATTCTACCACCCCGGAAAGGAGTACAACGTTCGCGTTGCTTCAAGgtgtggaaaa ... ctcacgtcagATACTTCAAAGGTCCGGAGCTGCTTGTGGACCTGCAGGACTACGATTACTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATGATTGATCACGAGCAGCGCAAGCTGCGGCTCATCGACTGGGGCCTGGCAGAATTCTACCACCCCGGAAAGGAGTACAACGTTCGCGTTGCTTCAAGgtgtggaaaaggcgttgcttgaatgtgatctcaattccaataatttgtgtgctgtcgcttctcacgtcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG