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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTTACTCCAAGGAAGACTTTGGCAAGCGAGTCATGGCCATCACAAACAATAGCGGCGTTCACGTTGTCTACGACTCGGTTGGCAGGGACACGTTCCAGgtacctctttctttgcaaagttcacgcaaagttctttgcaaacttcttcgcaaagttctttcacaagttctttagttagagttttcaaacttctcttttcttccag

Basic information

species Selaginella moellendorffii
transcript EFJ19355
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169065910|gb|FE475358.1|FE475358
EST:     ATAGCGGCGTTCACGTTGTCTACGACTCGGTTGGCAGGGACACGTTCCAG                         GGATCTCTCGATTGCTTGGCTACTCGCGGTTACATGATAAGTTATGGACAA
genomic: ATAGCGGCGTTCACGTTGTCTACGACTCGGTTGGCAGGGACACGTTCCAGgtacctcttt ... tttcttccagGGATCTCTCGATTGCTTGGCTACTCGCGGTTACATGATAAGTTATGGACAA
EST: gi|169102931|gb|FE505296.1|FE505296
EST:     ATAGCGGCGTTCACGTTGTCTACGACTCGGTTGGCAGGGACACGTTCCAG                         GGATCTCTCGATTGCTTGGCTACTCGCGGTTACATGATAAGTTATGGACAA
genomic: ATAGCGGCGTTCACGTTGTCTACGACTCGGTTGGCAGGGACACGTTCCAGgtacctcttt ... tttcttccagGGATCTCTCGATTGCTTGGCTACTCGCGGTTACATGATAAGTTATGGACAA
EST: gi|169037385|gb|FE445502.1|FE445502
EST:     ATAGCGGCGTTCACGTTGTCTACGACTCGGTTGGCAGGGACACGTTCCAG                         GGATCTCTCGATTGCTTGGCTACTCGCGGTTACATGATAAGTTATGGACAA
genomic: ATAGCGGCGTTCACGTTGTCTACGACTCGGTTGGCAGGGACACGTTCCAGgtacctcttt ... tttcttccagGGATCTCTCGATTGCTTGGCTACTCGCGGTTACATGATAAGTTATGGACAA
EST: gi|169070962|gb|FE476339.1|FE476339
EST:     ATAGCGGCGTTCACGTTGTCTACGACTCGGTTGGCAGGGACACGTTCCAG                         GGATCTCTCGATTGCTTGGCTACTCGCGGTTACATGATAAGTTATGGACAA
genomic: ATAGCGGCGTTCACGTTGTCTACGACTCGGTTGGCAGGGACACGTTCCAGgtacctcttt ... tttcttccagGGATCTCTCGATTGCTTGGCTACTCGCGGTTACATGATAAGTTATGGACAA
EST: gi|169037384|gb|FE445501.1|FE445501
EST:     ATAGCGGCGTTCACGTTGTTTACGACTCGGTTGGCAGGGACACGTTCCAG                         GGATCTCTCGATTGCTTGGCTACTCGCGGTTACATGATAAGTTATGGACAA
genomic: ATAGCGGCGTTCACGTTGTCTACGACTCGGTTGGCAGGGACACGTTCCAGgtacctcttt ... tttcttccagGGATCTCTCGATTGCTTGGCTACTCGCGGTTACATGATAAGTTATGGACAA
EST: gi|169102930|gb|FE505295.1|FE505295
EST:     ATAGCGGCGTTCACGTTGTCTACGACTCGGTTGGCAGGGACACGTTCCAG                         GGATCTCTCGATTGCTTGGCTACTCGCGGTTACATGATAAGTTATGGACAA
genomic: ATAGCGGCGTTCACGTTGTCTACGACTCGGTTGGCAGGGACACGTTCCAGgtacctcttt ... tttcttccagGGATCTCTCGATTGCTTGGCTACTCGCGGTTACATGATAAGTTATGGACAA
EST: gi|169062694|gb|FE470780.1|FE470780
EST:     ATAGCGGCGTTCACGTTGTCTACGACTCGGTTGGCAGGGACACGTTCCAG                         GGATCTCTCGATTGCTTGGCTACTCGCGGTTACATGATAAGTTATGGACAA
genomic: ATAGCGGCGTTCACGTTGTCTACGACTCGGTTGGCAGGGACACGTTCCAGgtacctcttt ... tttcttccagGGATCTCTCGATTGCTTGGCTACTCGCGGTTACATGATAAGTTATGGACAA
EST: gi|169065911|gb|FE475359.1|FE475359
EST:     ATAGCGGCGTTCACGTTGTCTACGACTCGGTTGGCAGGGACACGTTCCAG                         GGATCTCTCGATTGCTTGGCTACTCGCGGTTACATGATAAGTTATGGACAA
genomic: ATAGCGGCGTTCACGTTGTCTACGACTCGGTTGGCAGGGACACGTTCCAGgtacctcttt ... tttcttccagGGATCTCTCGATTGCTTGGCTACTCGCGGTTACATGATAAGTTATGGACAA
EST: gi|169062695|gb|FE470781.1|FE470781
EST:     ATAGCGGCGTTCACGTTGTCTACGACTCGGTTGGCAGGGACACGTTCCAG                         GGATCTCTCGATTGCTTGGCTACTCGCGGTTACATGATAAGTTATGGACAA
genomic: ATAGCGGCGTTCACGTTGTCTACGACTCGGTTGGCAGGGACACGTTCCAGgtacctcttt ... tttcttccagGGATCTCTCGATTGCTTGGCTACTCGCGGTTACATGATAAGTTATGGACAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 59

CATTTACTCCAAGGAAGACTTTGGCAAGCGAGTCATGGCCATCACAAACAATAGCGGCGTTCACGTTGTCTACGACTCGGTTGGCAGGGACACGTTCCAGgtacctcttt ... tttcttccagGGATCTCTCGATTGCTTGGCTACTCGCGGTTACATGATAAGTTATGGACAATCCTCCGGCGCTCCAGATCCTTTCACAATGTCCATACTCGCTCCAAAGT




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