1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GATCTCAAGAAGCGCGAGAAGGAACTGAAAGACAAGGAGGAACAACTTCGAAAGCGAGAAGCCGACGTGAAAAGGCGAGAGGATGCTGCTGCAAGAGgttctttagtgctttgtgttcttcgttttctcctctttgctaacacttcggctttaaccag
species | Selaginella moellendorffii |
transcript | EFJ18540 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCGAAAGCGAGAAGCCGACGTGAAAAGGCGAGAGGATGCTGCTGCAAGAG CTGGTATTGTGTTGGAGGAGAAGAACTGGCCACGCTTTTTCCCGATCCTACEST: gi|169105292|gb|FE507629.1|FE507629
genomic: TCGAAAGCGAGAAGCCGACGTGAAAAGGCGAGAGGATGCTGCTGCAAGAGgttctttagt ... ctttaaccagCTGGTATTGTGTTGGAGGAGAAGAACTGGCCACGCTTTTTTCCGATCCTAC
EST: TCGAAAGCGAGAAGCCGACGTGAAAAGGCGAGAGGATGCTGCTGCAAGAG CTGGTATTGTGTTGGAGGAGAAGAACTGGCCACGCTTTTTTCCGATCCTACEST: gi|169105684|gb|FE508450.1|FE508450
genomic: TCGAAAGCGAGAAGCCGACGTGAAAAGGCGAGAGGATGCTGCTGCAAGAGgttctttagt ... ctttaaccagCTGGTATTGTGTTGGAGGAGAAGAACTGGCCACGCTTTTTTCCGATCCTAC
EST: TCGAAAGCGAGAAGCCGACGTGAAAAGGCGAGAGGATGCTGCTGCAAGAG CTGGTATTGTGTTGGAGGAGAAGAACTGGCCACGCTTTTTCCCGATCCTACEST: gi|169045117|gb|FE450948.1|FE450948
genomic: TCGAAAGCGAGAAGCCGACGTGAAAAGGCGAGAGGATGCTGCTGCAAGAGgttctttagt ... ctttaaccagCTGGTATTGTGTTGGAGGAGAAGAACTGGCCACGCTTTTTTCCGATCCTAC
EST: TCGAAAGCGAGAAGCCGACGTGAAAAGGCGAGAGGATGCTGCTGCAAGAG CTGGTATTGTGTTGGAGGAGAAGAACTGGCCACGCTTTTTCCCGATCCTACEST: gi|169107453|gb|FE509141.1|FE509141
genomic: TCGAAAGCGAGAAGCCGACGTGAAAAGGCGAGAGGATGCTGCTGCAAGAGgttctttagt ... ctttaaccagCTGGTATTGTGTTGGAGGAGAAGAACTGGCCACGCTTTTTTCCGATCCTAC
EST: TCGAAAGCGAGAAGCCGACGTGAAAAGGCGAGAGGATGCTGCTGCAAGAG CTGGTATTGTGTTGGAGGAGAAGAACTGGCCACGCTTTTTCCCGATCCTACEST: gi|169113212|gb|FE515186.1|FE515186
genomic: TCGAAAGCGAGAAGCCGACGTGAAAAGGCGAGAGGATGCTGCTGCAAGAGgttctttagt ... ctttaaccagCTGGTATTGTGTTGGAGGAGAAGAACTGGCCACGCTTTTTTCCGATCCTAC
EST: TCGAAAGCGAGAAGCCGACGTGAAAAGGCGAGAGGATGCTGCTGCAAGAG CTGGTATTGTGTTGGAGGAGAAGAACTGGCCACGCTTTTTTCCGATCCTACEST: gi|169107452|gb|FE509140.1|FE509140
genomic: TCGAAAGCGAGAAGCCGACGTGAAAAGGCGAGAGGATGCTGCTGCAAGAGgttctttagt ... ctttaaccagCTGGTATTGTGTTGGAGGAGAAGAACTGGCCACGCTTTTTTCCGATCCTAC
EST: TCGAAAGCGAGAAGCCGACGTGAAAAGGCGAGAGGATGCTGCTGCAAGAG CTGGTATTGTGTTGGAGGAGAAGAACTGGCCACGCTTTTTCCCGATCCTACEST: gi|169102152|gb|FE505778.1|FE505778
genomic: TCGAAAGCGAGAAGCCGACGTGAAAAGGCGAGAGGATGCTGCTGCAAGAGgttctttagt ... ctttaaccagCTGGTATTGTGTTGGAGGAGAAGAACTGGCCACGCTTTTTTCCGATCCTAC
EST: TCGAAAGCGAGAAGCCGACGTGAAAAGGCGAGAGGATGCTGCTGCAAGAG CTGGTATTGTGTTGGAGGAGAAGAACTGGCCACGCTTTTTCCCGATCCTACEST: gi|169105683|gb|FE508449.1|FE508449
genomic: TCGAAAGCGAGAAGCCGACGTGAAAAGGCGAGAGGATGCTGCTGCAAGAGgttctttagt ... ctttaaccagCTGGTATTGTGTTGGAGGAGAAGAACTGGCCACGCTTTTTTCCGATCCTAC
EST: GCGAGAAGCCGACGTGAAAAGGCGAGAGGATGCTGCTGCAAGAG CTGGTATTGTGTTGGAGGAGAAGAACTGGCCACGCTTTTTCCCGATCCTACEST: gi|169036888|gb|FE443848.1|FE443848
genomic: GCGAGAAGCCGACGTGAAAAGGCGAGAGGATGCTGCTGCAAGAGgttctttagt ... ctttaaccagCTGGTATTGTGTTGGAGGAGAAGAACTGGCCACGCTTTTTTCCGATCCTAC
EST: TCGAAAGCGAGAAGCCGACGTGAAAAGGCGAGAGGATGCTGCTGCAAGAG CTGGTATTGTGTTGGAGGAGAAGAACTGGCCACGCTTTTTCCCGATCCTACEST: gi|169049667|gb|FE457759.1|FE457759
genomic: TCGAAAGCGAGAAGCCGACGTGAAAAGGCGAGAGGATGCTGCTGCAAGAGgttctttagt ... ctttaaccagCTGGTATTGTGTTGGAGGAGAAGAACTGGCCACGCTTTTTTCCGATCCTAC
EST: TCGAAAGCGAGAAGCCGACGTGAAAAGGCGAGAGGATGCTGCTGCAAGAG CTGGTATTGTGTTGGAGGAGAAGAACTGGCCACGCTTTTTCCCGATCCTACEST: gi|169052782|gb|FE463565.1|FE463565
genomic: TCGAAAGCGAGAAGCCGACGTGAAAAGGCGAGAGGATGCTGCTGCAAGAGgttctttagt ... ctttaaccagCTGGTATTGTGTTGGAGGAGAAGAACTGGCCACGCTTTTTTCCGATCCTAC
EST: TCGAAAGCGAGAAGCCGACGTGAAAAGGCGAGAGGATGCTGCTGCAAGAG CTGGTATTGTGTTGGAGGAGAAGAACTGGCCACGCTTTTTCCCGATCCTACEST: gi|169051998|gb|FE460337.1|FE460337
genomic: TCGAAAGCGAGAAGCCGACGTGAAAAGGCGAGAGGATGCTGCTGCAAGAGgttctttagt ... ctttaaccagCTGGTATTGTGTTGGAGGAGAAGAACTGGCCACGCTTTTTTCCGATCCTAC
EST: TCTAAAGCGAGAAGCCGACGTGAAAAGGCGAGAGGATGCTGCTGCAAGAG CTGGTATTGTGTTGGAGGAGAAGAACTGGCCACGCTTTTTCCCGATCCTACEST: gi|169049666|gb|FE457758.1|FE457758
genomic: TCGAAAGCGAGAAGCCGACGTGAAAAGGCGAGAGGATGCTGCTGCAAGAGgttctttagt ... ctttaaccagCTGGTATTGTGTTGGAGGAGAAGAACTGGCCACGCTTTTTTCCGATCCTAC
EST: CGAGAAGCCGACGTGAAAAGGCGAGAGGATGCTGCTGCAAGAG CTGGTATTGTGTTGGAGGAGAAGAACTGGCCACGCTTTTTCCCGATCCTACEST: gi|169102153|gb|FE505779.1|FE505779
genomic: CGAGAAGCCGACGTGAAAAGGCGAGAGGATGCTGCTGCAAGAGgttctttagt ... ctttaaccagCTGGTATTGTGTTGGAGGAGAAGAACTGGCCACGCTTTTTTCCGATCCTAC
EST: TCGAAAGCGAGAAGCCGACGTGAAAAGGCGAGAGGATGCTGCTGCAAGAG CTGGTATTGTGTTGGAGGAGAAGAACTGGCCACGCTTTTTCCCGATCCTAC
genomic: TCGAAAGCGAGAAGCCGACGTGAAAAGGCGAGAGGATGCTGCTGCAAGAGgttctttagt ... ctttaaccagCTGGTATTGTGTTGGAGGAGAAGAACTGGCCACGCTTTTTTCCGATCCTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCTCAAGAAGCGCGAGAAGGAACTGAAAGACAAGGAGGAACAACTTCGAAAGCGAGAAGCCGACGTGAAAAGGCGAGAGGATGCTGCTGCAAGAGgttctttagtgctttgtgttcttcgttttctcctctttgctaacacttcggctttaaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA