1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGCTACCATCTGGCCAGATGTCAAAGACTTCATTCCAAAGGCCTGGGACGAGAAAGAGATTTCTTTACATCTTCCGTATTTCACCAgtaagatcatctcattttatcactttgtgcgatttttcttaggattcgctgcag
species | Selaginella moellendorffii |
transcript | EFJ18240 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAAGGCCTGGGACGAGAAAGAGATTTCTTTACATCTTCCGTATTTCACCA ATGTTGGTGTGGAGTTTACTCTTGCCCAGCTGTTTGTATCCATTCCGGGAAEST: gi|169110322|gb|FE512081.1|FE512081
genomic: AAAGGCCTGGGACGAGAAAGAGATTTCTTTACATCTTCCGTATTTCACCAgtaagatcat ... ttcgctgcagATGTTGGTGTGGAGTTTACTCTTGCCCAGCTGTTTGTATCCATTCCGGGAA
EST: AAAGGCCTGGGACGAGAAAGAGATTTCTTTACATCTTCCGTATTTCACCA ATGTTGGTGTGGAGTTTACTCTTGCCCAGCTGTTTGTATCCATTCCGGGAAEST: gi|169074072|gb|FE481732.1|FE481732
genomic: AAAGGCCTGGGACGAGAAAGAGATTTCTTTACATCTTCCGTATTTCACCAgtaagatcat ... ttcgctgcagATGTTGGTGTGGAGTTTACTCTTGCCCAGCTGTTTGTATCCATTCCGGGAA
EST: GGACGAGAAAGAGATTTCTTTACATCTTCCGTATTTCACCA ATGTTGGTGTGGAGTTTACTCTTGCCCAGCTGTTTGTATCCATTCCGGGAAEST: gi|169059126|gb|FE468271.1|FE468271
genomic: GGACGAGAAAGAGATTTCTTTACATCTTCCGTATTTCACCAgtaagatcat ... ttcgctgcagATGTTGGTGTGGAGTTTACTCTTGCCCAGCTGTTTGTATCCATTCCGGGAA
EST: AAAGGCCTGGGACGAGAAAGAGATTTCTTTACATCTTCCGTATTTCACCA ATGTTGGTGTGGAGTTTACTCTTGCCCAGCTGTTTGTATCCATTCCGGGAAEST: gi|169074073|gb|FE481733.1|FE481733
genomic: AAAGGCCTGGGACGAGAAAGAGATTTCTTTACATCTTCCGTATTTCACCAgtaagatcat ... ttcgctgcagATGTTGGTGTGGAGTTTACTCTTGCCCAGCTGTTTGTATCCATTCCGGGAA
EST: AAAGGCCTGGGACGAGAAAGAGATTTCTTTACATCTTCCGTATTTCACCA ATGTTGGTGTGGAGTTTACTCTTGCCCAGCTGTTTGTATCCATTCCGGGAA
genomic: AAAGGCCTGGGACGAGAAAGAGATTTCTTTACATCTTCCGTATTTCACCAgtaagatcat ... ttcgctgcagATGTTGGTGTGGAGTTTACTCTTGCCCAGCTGTTTGTATCCATTCCGGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTACCATCTGGCCAGATGTCAAAGACTTCATTCCAAAGGCCTGGGACGAGAAAGAGATTTCTTTACATCTTCCGTATTTCACCAgtaagatcatctcattttatcactttgtgcgatttttcttaggattcgctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA