1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CGGACAACTTCAATGTCATCATGGAGCTGATGCAATCCATGCAGAGCTGCGGACAACCCCCGGCGGAGATGATCGAAGAACTCGCTCCTGGCTTGCAAATgtaagtccgtgtgtgtgttcttcgtcctctcttaactcctttttcccag
species | Selaginella moellendorffii |
transcript | EFJ17197 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGACAACCCCCGGCGGAGATGATCGAAGAACTCGCTCCTGGCTTGCAAAT CTTCTCACCGGATAACTTGGCCTCCTTGCCACCGGGCCTAGCANACGAGAAEST: gi|169108945|gb|FE512330.1|FE512330
genomic: GGACAACCCCCGGCGGAGATGATCGAAGAACTCGCTCCTGGCTTGCAAATgtaagtccgt ... tttttcccagCTTCTCACCGGATAACTTGGCCTCCTTGCCACCGGGCCTAGCAAACGAGAA
EST: GGACAACCCCCGGCGGAGATGATCGAAGAACTCGCTCCTGGCTTGCAAAT CTTCTCACCGGATAACTTGGCCTCCTTGCCACCGGGCCTAGCAAACGAGAAEST: gi|169054299|gb|FE460744.1|FE460744
genomic: GGACAACCCCCGGCGGAGATGATCGAAGAACTCGCTCCTGGCTTGCAAATgtaagtccgt ... tttttcccagCTTCTCACCGGATAACTTGGCCTCCTTGCCACCGGGCCTAGCAAACGAGAA
EST: GGACAACCCCCGGCGGAGATGATCGAAGAACTCGCTCCTGGCTTGCAAAT GTTCTCACCGGATAACTTGGCCTCCTTGCCACCGGGCCTAGCANACGAGAAEST: gi|169108944|gb|FE512329.1|FE512329
genomic: GGACAACCCCCGGCGGAGATGATCGAAGAACTCGCTCCTGGCTTGCAAATgtaagtccgt ... tttttcccagCTTCTCACCGGATAACTTGGCCTCCTTGCCACCGGGCCTAGCAAACGAGAA
EST: GGACAACCCCCGGCGGAGATGATCGAAGAACTCGCTCCTGGCTTGCAAAT CTTCTCACCGGATAACTTGGCCTCCTTGCCACCGGGCCTAGCAAACGAGAAEST: gi|169054298|gb|FE460743.1|FE460743
genomic: GGACAACCCCCGGCGGAGATGATCGAAGAACTCGCTCCTGGCTTGCAAATgtaagtccgt ... tttttcccagCTTCTCACCGGATAACTTGGCCTCCTTGCCACCGGGCCTAGCAAACGAGAA
EST: GGACAACCCCCGGCGGAGATGATCGAAGAACTCGCTCCTGGCTTGCAAAT GTTCTCACCGGATAACTTGGCCTCCTTGCCACCGGGCCTAGCAAACGAGAAEST: gi|169035603|gb|FE445373.1|FE445373
genomic: GGACAACCCCCGGCGGAGATGATCGAAGAACTCGCTCCTGGCTTGCAAATgtaagtccgt ... tttttcccagCTTCTCACCGGATAACTTGGCCTCCTTGCCACCGGGCCTAGCAAACGAGAA
EST: GGACAACCCCCGGCGGAGATGATCGAAGAACTCGCTCCTGGCTTGCAAAT CTTCTCACCGGATAACTTGGCCTCCTTGCCACCGGGCCTAGCANACGAGAAEST: gi|169073128|gb|FE484181.1|FE484181
genomic: GGACAACCCCCGGCGGAGATGATCGAAGAACTCGCTCCTGGCTTGCAAATgtaagtccgt ... tttttcccagCTTCTCACCGGATAACTTGGCCTCCTTGCCACCGGGCCTAGCAAACGAGAA
EST: GGACAACCCCCGGCGGAGATGATCGAAGAACTCGCTCCTGGCTTGCAAAT CTTCTCACCGGATAACTTGGCCTCCTTGCCACCGGGCCTAGCAAACGAGAA
genomic: GGACAACCCCCGGCGGAGATGATCGAAGAACTCGCTCCTGGCTTGCAAATgtaagtccgt ... tttttcccagCTTCTCACCGGATAACTTGGCCTCCTTGCCACCGGGCCTAGCAAACGAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGACAACTTCAATGTCATCATGGAGCTGATGCAATCCATGCAGAGCTGCGGACAACCCCCGGCGGAGATGATCGAAGAACTCGCTCCTGGCTTGCAAATgtaagtccgtgtgtgtgttcttcgtcctctcttaactcctttttcccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC