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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCAGCTTTGGAACCGATTTTGCTGCCATTGCAAAGTTCGTCGGGACGAGAAGCTCCACTCAAGTTCGCACTCACGCGCAGAAATACTACGCCAAACTTgtaagtgccgagcttcccatccgcgattctagcagtgcaaacttgtggatcgctttcgctttag

Basic information

species Selaginella moellendorffii
transcript EFJ17165
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ17165 (Selaginella moellendorffii), 5'ss of exon 4
lower sequence: PP1S80_153V6.1 (Physcomitrella patens), 5'ss of exon 4
TTGCAGCTTTGGAACCGATTTTGCTGCCATTGCAAAGTTCGTCGGGACGAGAAGCTCCACTCAAGTTCGCACTCACGCGCAGAAATACTACGCCAAACTTgtaa-gtgccgagcttcccatccgcgattcta-gcagtgc--aaacttgtggatcgctttcgctttag--------------------------------
       |||||||| ||||||||||| ||||| |||||||| |||||  ||||||| |||||||||||||| || ||||| |||||||| || ||  | |||| ||       | || ||    ||| ||  |   | |   ||| |    |     |||      |                                
------GTTTGGAACAGATTTTGCTGCGATTGCTAAGTTCGTGGGGACTCGAAGCTCAACTCAAGTTCGCACACATGCGCAAAAATACTATGCAAAGTTGgtaaagttatcttttaccaatgtaggatccttcgtgattccagaacctcataactatattcatcaatgtgatgcaacatctaaagcaatgataatagttc

upper sequence: EFJ17165 (Selaginella moellendorffii), 5'ss of exon 4
lower sequence: PP1S87_134V6.1 (Physcomitrella patens), 5'ss of exon 4
TTGCAGCTTTGGAACCGATTTTGCTGCCATTGCAAAGTTCGTCGGGACGAGAAGCTCCACTCAAGTTCGCACTCACGCGCAGAAATACTACGCCAAACTTgtaagt---gccgagcttcccatccgcgattctagcagtgcaaacttgtggatcgctttcgctttag---------------------------------
       |||||||| ||||||||||| ||||| |||||||| || ||  | || ||||| |||||||||||||| ||||| ||||||||||| ||  | ||| ||    | |  |     |       || | ||    ||  | | |   |      ||   |||                                 
------ATTTGGAACAGATTTTGCTGCTATTGCCAAGTTCGTAGGCACACGCAGTTCCACCCAAGTTCGCACTCATGCGCAAAAATACTACGCGAAGTTGgtatgttatcctgtacgcttgaagtatctttattgcttgacagccgtatcattaaaagacgtagtagtagctgtctaaatggtatgagtgtaagcaggtg