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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATATGCTACTATTGCTGGAGATGTGATCATGGCTGCTGCCTACGCGCACGAATTGCCGCGCTATGGTCTCAAGGTTGGCCTCACAAACTACGCGGCTGgtaattctctatctttgccttgccaaaccattttttttctcacgttttctatgacttcgtttgtag

Basic information

species Selaginella moellendorffii
transcript EFJ17161
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169079162|gb|FE490909.1|FE490909
EST:     CGAATTGCCGCGCTATGGTCTCAAGGTTGGCCTCACAAACTACGCGGCTG                         CTTACTGCACGGGGTTGCTGCTGGCAAGGAGGCTGCTCACGAAAATGGGCA
genomic: CGAATTGCCGCGCTATGGTCTCAAGGTTGGCCTCACAAACTACGCGGCTGgtaattctct ... tcgtttgtagCTTACTGCACGGGGCTGCTGCTGGCAAGGAGGCTGCTCACGAAAATGGGCA
EST: gi|169079163|gb|FE490910.1|FE490910
EST:     CGAATTGCCGCGCTATGGTCTCAAGGTTGGCCTCACAAACTACGCGGCTG                         CTTACTGCACGGGGTTGCTGCTGGCAAGGAGGCTGCTCACGAAAATGGGCA
genomic: CGAATTGCCGCGCTATGGTCTCAAGGTTGGCCTCACAAACTACGCGGCTGgtaattctct ... tcgtttgtagCTTACTGCACGGGGCTGCTGCTGGCAAGGAGGCTGCTCACGAAAATGGGCA
EST: gi|169033526|gb|FE442078.1|FE442078
EST:     CGAATTGCCGCGCTATGGTCTCAAGGTTGGCCTCACAAACTACGCGGCTG                         CTTACTGCACGGGGCTGCTGCTGGCAAGGAGGCTGCTCACGAAAATGGGCA
genomic: CGAATTGCCGCGCTATGGTCTCAAGGTTGGCCTCACAAACTACGCGGCTGgtaattctct ... tcgtttgtagCTTACTGCACGGGGCTGCTGCTGGCAAGGAGGCTGCTCACGAAAATGGGCA
EST: gi|169110841|gb|FE509324.1|FE509324
EST:     CGAATTGCCGCGCTATGGTCTCAAGGTTGGCCTCACAAACTACGCGGCTG                         CTTACTGCACGGGGTTGCTGCTGGCAAGGAGGCTGCTCACGAAAATGGGCA
genomic: CGAATTGCCGCGCTATGGTCTCAAGGTTGGCCTCACAAACTACGCGGCTGgtaattctct ... tcgtttgtagCTTACTGCACGGGGCTGCTGCTGGCAAGGAGGCTGCTCACGAAAATGGGCA
EST: gi|169051355|gb|FE459213.1|FE459213
EST:     CGAATTGCCGCGCTATGGTCTCAAGGTTGGCCTCACAAACTACGCGGCTG                         CTTACTGCACGGGGCTGCTGCTGGCAAGGAGGCTGCTCACGAAAATGGGCA
genomic: CGAATTGCCGCGCTATGGTCTCAAGGTTGGCCTCACAAACTACGCGGCTGgtaattctct ... tcgtttgtagCTTACTGCACGGGGCTGCTGCTGGCAAGGAGGCTGCTCACGAAAATGGGCA
EST: gi|169110842|gb|FE509325.1|FE509325
EST:     CGAATTGCCGCGCTATGGTCTCAAGGTTGGCCTCACAAACTACGCGGCTG                         CTTACTGCACGGGGTTGCTGCTGGCAAGGAGGCTGCTCACGAAAATGGGCA
genomic: CGAATTGCCGCGCTATGGTCTCAAGGTTGGCCTCACAAACTACGCGGCTGgtaattctct ... tcgtttgtagCTTACTGCACGGGGCTGCTGCTGGCAAGGAGGCTGCTCACGAAAATGGGCA
EST: gi|169039069|gb|FE448785.1|FE448785
EST:     CGAATTGCCGCGCTATGGTCTCAAGGTTGGCCTCACAAACTACGCGGCTG                         CTTACTGCACGGGGTTGCTGCTGGCAAGGAGGCTGCTCACGAAAATGGGCA
genomic: CGAATTGCCGCGCTATGGTCTCAAGGTTGGCCTCACAAACTACGCGGCTGgtaattctct ... tcgtttgtagCTTACTGCACGGGGCTGCTGCTGGCAAGGAGGCTGCTCACGAAAATGGGCA
EST: gi|169051354|gb|FE459212.1|FE459212
EST:     TCACAAACTACGCGGCTG                         CTTACTGCACGGGGCTGCTGCTGGCAAGGAGGCTGCTCACGAAAATGGGCA
genomic: TCACAAACTACGCGGCTGgtaattctct ... tcgtttgtagCTTACTGCACGGGGCTGCTGCTGGCAAGGAGGCTGCTCACGAAAATGGGCA
EST: gi|70670052|gb|DN838629.1|DN838629
EST:     CGAATTGCCGCGCTATGGTCTCAAGGTTGGCCTCACAAACTACGCGGCTG                         CTTACTGCACGGGGTTGCTGCTGGCAAGGAGGCTGCTCACGAAAATGGGCA
genomic: CGAATTGCCGCGCTATGGTCTCAAGGTTGGCCTCACAAACTACGCGGCTGgtaattctct ... tcgtttgtagCTTACTGCACGGGGCTGCTGCTGGCAAGGAGGCTGCTCACGAAAATGGGCA
EST: gi|169106956|gb|FE508839.1|FE508839
EST:     CGAATTGCCGCGCTATGGTCTCAAGGTTGGCCTCACAAACTACGCGGCTG                         CTTACTGCACGGGGCTGCTGCTGGCAAGGAGGCTGCTCACGAAAATGGGCA
genomic: CGAATTGCCGCGCTATGGTCTCAAGGTTGGCCTCACAAACTACGCGGCTGgtaattctct ... tcgtttgtagCTTACTGCACGGGGCTGCTGCTGGCAAGGAGGCTGCTCACGAAAATGGGCA
EST: gi|169041727|gb|FE449298.1|FE449298
EST:     CGAATTGCCGCGCTATGGTCTCAAGGTTGGCCTCACAAACTACGCGGCTG                         CTTACTGCACGGGGTTGCTGCTGGCAAGGAGGCTGCTCACGAAAATGGGCA
genomic: CGAATTGCCGCGCTATGGTCTCAAGGTTGGCCTCACAAACTACGCGGCTGgtaattctct ... tcgtttgtagCTTACTGCACGGGGCTGCTGCTGGCAAGGAGGCTGCTCACGAAAATGGGCA
EST: gi|169033527|gb|FE442079.1|FE442079
EST:     CGAATTGCCGCGCTATGGTCTCAAGGTTGGCCTCACAAACTACGCGGCTG                         CTTACTGCACGGGGCTGCTGCTGGCAAGGAGGCTGCTCACGAAAATGGGCA
genomic: CGAATTGCCGCGCTATGGTCTCAAGGTTGGCCTCACAAACTACGCGGCTGgtaattctct ... tcgtttgtagCTTACTGCACGGGGCTGCTGCTGGCAAGGAGGCTGCTCACGAAAATGGGCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 74

GCATATGCTACTATTGCTGGAGATGTGATCATGGCTGCTGCCTACGCGCACGAATTGCCGCGCTATGGTCTCAAGGTTGGCCTCACAAACTACGCGGCTGgtaattctct ... tcgtttgtagCTTACTGCACGGGGCTGCTGCTGGCAAGGAGGCTGCTCACGAAAATGGGCATGGCTGACATCTACGAGGGAAACACTGAT




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