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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCTAAGAGGATTCGGGGTCACAGAGATCTTCCTTTCAAGATCAACCAGTGGTGTAACGTGGTTCGCTGGGAGTTTAAGCACCCAACTCCTTTCATAAGgtagcttctcctcgattctctttctgagatgatacgtaattctcttttcag

Basic information

species Selaginella moellendorffii
transcript EFJ15689
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ15689 (Selaginella moellendorffii), 5'ss of exon 4
lower sequence: LOC_Os12g25710.3 (Oryza sativa), 5'ss of exon 5
TTGCTAAGAGGATTCGGGGTCACAGAGATCTTCCTTTCAAGATCAACCAGTGGTGTAACGTGGTTCGCTGGGAGTTTAAGCACCCAACTCCTTTCATAAGgtagc---ttctcctcgattctctttctgagatgatac-----gtaattctcttttcag-----------------------------------------
|  | ||  ||||  |  ||||  | ||  | ||||| | |   ||||||||||||||||| || || ||||||||||   | |||||||| ||||||||||||    || |     |  | ||  |||   |  | |     ||   |  |||   ||                                         
TCTCCAAATGGATAAGAAGTCATCGGGACTTACCTTTGAGGTGTAACCAGTGGTGTAACGTCGTGCGATGGGAGTTTAGCAATCCAACTCCATTCATAAGgtagtcaattgtttataaacccctccctgccctatttcctctagtgcctggcttgcaagctttgtcctcaatagtgcctgattgcctgcatcctaacaaa

upper sequence: EFJ15689 (Selaginella moellendorffii), 5'ss of exon 4
lower sequence: PP1S7_175V6.1 (Physcomitrella patens), 5'ss of exon 4
TTGCTAAGAGGATTCGGGGTCACAGAGATCTTCCTTTCAAGATCAACCAGTGGTGTAACGTGGTTCGCTGGGAGTTTAAGCACCCAACTCCTTTCATAAGgt-------agcttctcctcgattctctttctgagatgatacgtaattctcttttcag------------------------------------------
| |||||  ||||||| |||||  | ||||||||| | |  ||||||||||||||||||||||| || ||||||||||||||||| || ||||| || ||||       | |    ||   | ||   || ||   |         || | |  | |                                           
TCGCTAAATGGATTCGTGGTCATCGTGATCTTCCTCTTAGAATCAACCAGTGGTGTAACGTGGTGCGGTGGGAGTTTAAGCACCCCACCCCTTTTATCAGgtgagacttaacaaacccggaaatcgacttttgcagtttcctcgggttttgtactgaagttgcaatgattaagtcattaaattgtttaaagtatcctcta