1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAGCGAACGGGAAGGATATCTTTTAAGCTGTTTGACAGGAATCCTGGTGATTTTCCGCAGCTCTTACGAGCACAGgtaaggagacaggctattgattctaatccagttttcgctttggctag
species | Selaginella moellendorffii |
transcript | EFJ15634 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGCTGTTTGACAGGAATCCTGGTGATTTTCCGCAGCTCTTACGAGCACAG ATTCTTGAATGGCTCTCACATGTTCCCTCCGACATGGAAAGCTACATTCGAEST: gi|169095903|gb|FE497281.1|FE497281
genomic: AGCTGTTTGACAGGAATCCTGGTGATTTTCCGCAGCTCTTACGAGCACAGgtaaggagac ... ctttggctagATTCTTGAATGGCTCTCACATGTTCCCTCCGACATGGAAAGCTACATTCGA
EST: AGCTGTTTGACAGGAATCCTGGTGATTTTCCGCAGCTCTTACGAGCACAG ATTCTTGAATGGCTCTCACATGTTCCCTCCGACATGGAAAGCTACATTCGAEST: gi|169030797|gb|FE438143.1|FE438143
genomic: AGCTGTTTGACAGGAATCCTGGTGATTTTCCGCAGCTCTTACGAGCACAGgtaaggagac ... ctttggctagATTCTTGAATGGCTCTCACATGTTCCCTCCGACATGGAAAGCTACATTCGA
EST: AGCTGTTTGACAGGAATCCTGGTGATTTTCCGCAGCTCTTACGAGCACAG ATTCTTGAATGGCTCTCACATGTTCCCTCCGACATGGAAAGCTACATTCGAEST: gi|169038608|gb|FE450131.1|FE450131
genomic: AGCTGTTTGACAGGAATCCTGGTGATTTTCCGCAGCTCTTACGAGCACAGgtaaggagac ... ctttggctagATTCTTGAATGGCTCTCACATGTTCCCTCCGACATGGAAAGCTACATTCGA
EST: AGCTGTTTGACAGGAATCCTGGTGATTTTCCGCAGCTCTTACGAGCACAG ATTCTTGAATGGCTCTCACATGTTCCCTCCGACATGGAAAGCTACATTCGAEST: gi|169103571|gb|FE507613.1|FE507613
genomic: AGCTGTTTGACAGGAATCCTGGTGATTTTCCGCAGCTCTTACGAGCACAGgtaaggagac ... ctttggctagATTCTTGAATGGCTCTCACATGTTCCCTCCGACATGGAAAGCTACATTCGA
EST: AGCTGTTTGACAGGAATCCTGGTGATTTTCCGCAGCTCTTACGAGCACAG ATTCTTGAATGGCTCTCACATGTTCCCTCCGACATGGAAAGCTACATTCGAEST: gi|169113874|gb|FE515929.1|FE515929
genomic: AGCTGTTTGACAGGAATCCTGGTGATTTTCCGCAGCTCTTACGAGCACAGgtaaggagac ... ctttggctagATTCTTGAATGGCTCTCACATGTTCCCTCCGACATGGAAAGCTACATTCGA
EST: AGCTGTTTGACAGGAATCCTGGTGATTTTCCGCAGCTCTTACGAGCACAG ATTCTTGAATGGCTCTCACATGTTCCCTCCGACATGGAAAGCTACATTCGAEST: gi|169057609|gb|FE463660.1|FE463660
genomic: AGCTGTTTGACAGGAATCCTGGTGATTTTCCGCAGCTCTTACGAGCACAGgtaaggagac ... ctttggctagATTCTTGAATGGCTCTCACATGTTCCCTCCGACATGGAAAGCTACATTCGA
EST: AGCTGTTTGACAGGAATCCTGGTGATTTTCCGCAGCTCTTACGAGCACAG ATTCTTGAATGGCTCTCACATGTTCCCTCCGACATGGAAAGCTACATTCGAEST: gi|169024640|gb|FE432823.1|FE432823
genomic: AGCTGTTTGACAGGAATCCTGGTGATTTTCCGCAGCTCTTACGAGCACAGgtaaggagac ... ctttggctagATTCTTGAATGGCTCTCACATGTTCCCTCCGACATGGAAAGCTACATTCGA
EST: AGCTGTTTGACAGGAATCCTGGTGATTTTCCGCAGCTCTTACGAGCACAG ATTCTTGAATGGCTCTCACATGTTCCCTCCGACATGGAAAGCTACATTCGAEST: gi|169096098|gb|FE500050.1|FE500050
genomic: AGCTGTTTGACAGGAATCCTGGTGATTTTCCGCAGCTCTTACGAGCACAGgtaaggagac ... ctttggctagATTCTTGAATGGCTCTCACATGTTCCCTCCGACATGGAAAGCTACATTCGA
EST: AGCTGTTTGACAGGAATCCTGGTGATTTTCCGCAGCTCTTACGAGCACAG ATTCTTGAATGGCTCTCACATGTTCCCTCCGACATGGAAAGCTACATTCGAEST: gi|169037499|gb|FE445538.1|FE445538
genomic: AGCTGTTTGACAGGAATCCTGGTGATTTTCCGCAGCTCTTACGAGCACAGgtaaggagac ... ctttggctagATTCTTGAATGGCTCTCACATGTTCCCTCCGACATGGAAAGCTACATTCGA
EST: AGCTGTTTGACAGGAATCCTGGTGATTTTCCGCAGCTCTTACGAGCACAG ATTCTTGAATGGCTCTCACATGTTCCCTCCGACATGGAAAGCTACATTCGA
genomic: AGCTGTTTGACAGGAATCCTGGTGATTTTCCGCAGCTCTTACGAGCACAGgtaaggagac ... ctttggctagATTCTTGAATGGCTCTCACATGTTCCCTCCGACATGGAAAGCTACATTCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCGAACGGGAAGGATATCTTTTAAGCTGTTTGACAGGAATCCTGGTGATTTTCCGCAGCTCTTACGAGCACAGgtaaggagacaggctattgattctaatccagttttcgctttggctag
- - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC