1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GATAAGTCCTGGCGTGTACGCTTTATGGTTGCTAATCAGCTCTACGAGCTTTGCGAAGCAGTAGGTGCGGAGGCTACGAGgtagttgcatcacattattctgagagcattgagggcctgacgacgttttctttcaaag
species | Selaginella moellendorffii |
transcript | EFJ15458 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCTAATCAGCTCTACGAGCTTTGCGAAGCAGTAGGTGCGGAGGCTACGAG GACCGAACTCGTTCCAGCTTACGTGAGACTTTTGCGTGACAATGAEST: gi|169030962|gb|FE439829.1|FE439829
genomic: GCTAATCAGCTCTACGAGCTTTGCGAAGCAGTAGGTGCGGAGGCTACGAGgtagttgcat ... tctttcaaagGACCGAACTCGTTCCAGCTTACGTGAGACTTTTGCGTGACAATGA
EST: GCTAATCAGCTCTACGAGCTTTGCGAAGCAGTAGGTGCGGAGGCTACGAG GACCGAACTCGTTCCAGCTTACGTGAGACTTTTGCGTGACAATGAGGCGGAEST: gi|169030963|gb|FE439830.1|FE439830
genomic: GCTAATCAGCTCTACGAGCTTTGCGAAGCAGTAGGTGCGGAGGCTACGAGgtagttgcat ... tctttcaaagGACCGAACTCGTTCCAGCTTACGTGAGACTTTTGCGTGACAATGAGGCGGA
EST: GCTAATCAGCTCTACGAGCTTTGCGAAGCAGTAGGTGCGGAGGCTACGAG GACCGAACTCGTTCCAGCTTACGTGAGACTTTTGCGTGACAATGEST: gi|169028896|gb|FE438595.1|FE438595
genomic: GCTAATCAGCTCTACGAGCTTTGCGAAGCAGTAGGTGCGGAGGCTACGAGgtagttgcat ... tctttcaaagGACCGAACTCGTTCCAGCTTACGTGAGACTTTTGCGTGACAATG
EST: GCTAATCAGCTCTACGAGCTTTGCGAAGCAGTAGGTGCGGAGGCTACGAG GACCGAACTCGTTCCAGCTTACGTGAGACTTTTGCGTGACAATGAGGCGGA
genomic: GCTAATCAGCTCTACGAGCTTTGCGAAGCAGTAGGTGCGGAGGCTACGAGgtagttgcat ... tctttcaaagGACCGAACTCGTTCCAGCTTACGTGAGACTTTTGCGTGACAATGAGGCGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATAAGTCCTGGCGTGTACGCTTTATGGTTGCTAATCAGCTCTACGAGCTTTGCGAAGCAGTAGGTGCGGAGGCTACGAGgtagttgcatcacattattctgagagcattgagggcctgacgacgttttctttcaaag
- - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - GAGCTT