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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGATGGCATGGAAAAAGTATAACTTGAGCTTGGGAGTGGGACTCAACAAAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagttctttcttttttatcgaaaacttgcacgactcaagaagctttcttttgtcccag

Basic information

species Selaginella moellendorffii
transcript EFJ15151
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ15151 (Selaginella moellendorffii), 5'ss of exon 4
lower sequence: AT2G13360.1 (Arabidopsis thaliana), 5'ss of exon 4
GAAGATGGCATGGAAAAAGTATAACTTGAGCTTGGGAGTGGGACTCAACAAAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagttctttcttttttatcgaaa----acttgcacgactcaagaagctttcttttgtcccag-----------
||  | ||||||| | | ||| ||||| ||  | ||  | || |||||||||||||| || ||||||||||| ||||| ||||| ||    || || |||||    |      | | | |||  | ||    | || ||     |||     | ||        ||            
GAGAAGGGCATGGCAGAGGTACAACTTAAGTCTTGGTCTTGGTCTCAACAAAGTGGCTGGAAAGGTTTTCAGAATTGGACACCTAGGAAATGTGAATGAGgtacatatcgagatttatcttagtgtaatccaattttcattgaccaaactcttatcaaacaatacaaatcgaacgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169062304|gb|FE470494.1|FE470494
EST:     AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAG                         TTGCAACTGCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
genomic: AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
EST: gi|169052102|gb|FE463223.1|FE463223
EST:     AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAG                         TTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
genomic: AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
EST: gi|169040696|gb|FE447331.1|FE447331
EST:     AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAG                         TTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
genomic: AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
EST: gi|169103110|gb|FE506307.1|FE506307
EST:     AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAG                         TTGCAACTGCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
genomic: AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
EST: gi|169114563|gb|FE516633.1|FE516633
EST:     AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAG                         TTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
genomic: AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
EST: gi|169112651|gb|FE509424.1|FE509424
EST:     AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAG                         TTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
genomic: AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
EST: gi|169075995|gb|FE482862.1|FE482862
EST:     AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAG                         TTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
genomic: AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
EST: gi|169108139|gb|FE512512.1|FE512512
EST:     AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAG                         TTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
genomic: AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
EST: gi|169030413|gb|FE438669.1|FE438669
EST:     AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAG                         TTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
genomic: AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
EST: gi|169115603|gb|FE517813.1|FE517813
EST:     AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAG                         TTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
genomic: AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
EST: gi|169098472|gb|FE500166.1|FE500166
EST:     AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAG                         TTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
genomic: AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
EST: gi|169039551|gb|FE449941.1|FE449941
EST:     AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAG                         TTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
genomic: AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
EST: gi|169103252|gb|FE505630.1|FE505630
EST:     AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAG                         TTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
genomic: AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
EST: gi|169105004|gb|FE505885.1|FE505885
EST:     AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAG                         TTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
genomic: AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
EST: gi|169071460|gb|FE480425.1|FE480425
EST:     AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAG                         TTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
genomic: AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
EST: gi|169107737|gb|FE511460.1|FE511460
EST:     AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAG                         TTGCAACTGCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
genomic: AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
EST: gi|169103587|gb|FE508955.1|FE508955
EST:     AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAG                         TTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
genomic: AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
EST: gi|169093294|gb|FE492676.1|FE492676
EST:     AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAG                         TTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
genomic: AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
EST: gi|169094120|gb|FE496100.1|FE496100
EST:     AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAG                         TTGCAACTGCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
genomic: AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
EST: gi|169054674|gb|FE461614.1|FE461614
EST:     AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAG                         TTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
genomic: AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
EST: gi|169103670|gb|FE506867.1|FE506867
EST:     AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAG                         TTGCAACTGCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
genomic: AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
EST: gi|169050536|gb|FE458902.1|FE458902
EST:     AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAG                         TTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
genomic: AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
EST: gi|169060857|gb|FE469252.1|FE469252
EST:     AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAG                         TTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
genomic: AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
EST: gi|169110099|gb|FE511585.1|FE511585
EST:     AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAG                         TTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
genomic: AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
EST: gi|169054643|gb|FE461583.1|FE461583
EST:     AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAG                         TTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
genomic: AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
EST: gi|169055017|gb|FE462945.1|FE462945
EST:     AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTANACGAG                         TTGCAACTGCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCANAGACATT
genomic: AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
EST: gi|169038825|gb|FE447501.1|FE447501
EST:     AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTAGTAAACGAG                         TTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
genomic: AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
EST: gi|169113217|gb|FE515191.1|FE515191
EST:     AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAG                         TTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
genomic: AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
EST: gi|169116404|gb|FE517767.1|FE517767
EST:     AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAG                         TTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
genomic: AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
EST: gi|169115602|gb|FE517812.1|FE517812
EST:     AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAG                         TTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
genomic: AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
EST: gi|169037462|gb|FE445527.1|FE445527
EST:     AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAG                         TTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
genomic: AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
EST: gi|169070621|gb|FE478845.1|FE478845
EST:     AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAG                         TTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
genomic: AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
EST: gi|169108140|gb|FE512513.1|FE512513
EST:     AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAG                         TTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
genomic: AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
EST: gi|169116403|gb|FE517766.1|FE517766
EST:     AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAG                         TTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
genomic: AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
EST: gi|169113226|gb|FE515499.1|FE515499
EST:     AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAG                         TTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
genomic: AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
EST: gi|70669315|gb|DN837892.1|DN837892
EST:     AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAG                         TTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
genomic: AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
EST: gi|169022293|gb|FE431252.1|FE431252
EST:     AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAG                         TTGCAACTGCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
genomic: AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
EST: gi|169065038|gb|FE475110.1|FE475110
EST:     AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAG                         TTGCAACTGCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
genomic: AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
EST: gi|169019654|gb|FE427990.1|FE427990
EST:     AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAG                         TTGCAACTCCTGGGAGCCTTAAGTGGGGTGGGGATGATCCTCAAAGACATT
genomic: AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
EST: gi|169040697|gb|FE447332.1|FE447332
EST:     AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAG                         TTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
genomic: AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
EST: gi|169066514|gb|FE474100.1|FE474100
EST:     AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAG                         TTGCAACTGCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT
genomic: AAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 195

GAAGATGGCATGGAAAAAGTATAACTTGAGCTTGGGAGTGGGACTCAACAAAGTGGCAGGCAAGGTTTTCAGGATTGGGCACCTGGGTTTCGTAAACGAGgtgagaagtt ... tttgtcccagTTGCAACTCCTGGGAGCCTTAAGTGGGGTGGAGATGATCCTCAAAGACATTGGATACCCGGTTGTGCTTGGAAGTGGCGTCGCCGCTGCTGCCGCTCACC




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