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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCCACTCCAAAGCAAATCCGAGAACTCATGAAGGTAGATGGTCTTACAAACGATGAAGTAAAAAGCCACCTCCAGgtgagtgatccagtttcatctcgaagtcgattcgattgattttcttttcgttggatcaagcag

Basic information

species Selaginella moellendorffii
transcript EFJ15083
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ15083 (Selaginella moellendorffii), 5'ss of exon 4
lower sequence: LOC_Os07g02800.2 (Oryza sativa), 5'ss of exon 4
TTGCCACTCCAAAGCAAATCCGAGAACTCATGAAGGTAGATGGTCTTACAAACGATGAAGTAAAAAGCCACCTCCAGgtgagtgatccagtttcatctcgaagtcgattcgattgattttcttttcgttgg-atcaagcag--------------------------------------------------------------------
|||||||||||||||||||| | || || |||||||| ||||| || ||||| || || || |||||||| || ||||||||  |          | |     | | ||      |  || | ||| |     |  || |                                                                     
TTGCCACTCCAAAGCAAATCAGGGAGCTGATGAAGGTGGATGGACTGACAAATGACGAGGTCAAAAGCCATCTTCAGgtgaggaaaattcaccactgttttttttgtttaccacaagattttcttcatcaatgttcagtaacaatcatgacttctcgcgacggatttgcgatgatactgatgtcgatttttgcgattctgattgcgcag

upper sequence: EFJ15083 (Selaginella moellendorffii), 5'ss of exon 4
lower sequence: LOC_Os03g55590.3 (Oryza sativa), 5'ss of exon 2
-----------------------TTGCCACTCCAAAGCAAATCCGAGAACTCATGAAGGTAGATGGTCTTACAAACGATGAAGTAAAAAGCCACCTCCAGgtgagtga-----tccagtttcatctcgaagtcgattc---------gattgattttcttttcgttggatcaagcag--------------------------------------------------------------
                       |||| ||||||||||||||| | ||  | |||||||| ||||| || || ||||| ||||| |||||||| |||||||||||  |      |   ||| || ||     | |||           |||  || ||  |||  ||  |||  ||                                                               
TTGTTGTTCCACCATGATTGCAGTTGCTACTCCAAAGCAAATCAGGGAGGTGATGAAGGTTGATGGGCTCACCAACGACGAAGTGAAAAGCCATCTCCAGgtgagcaaacacccctcattttatttcagcaaccatttcttgaaacaaattagttctcgcttc-ctgattcattcatttcattattccatatcttgcttgttgatactgattttgatcatgtcatgcaaatattttcag

upper sequence: EFJ15083 (Selaginella moellendorffii), 5'ss of exon 4
lower sequence: LOC_Os03g55590.1 (Oryza sativa), 5'ss of exon 4
TTGCCACTCCAAAGCAAATCCGAGAACTCATGAAGGTAGATGGTCTTACAAACGATGAAGTAAAAAGCCACCTCCAGgtgagtga-----tccagtttcatctcgaagtcgattc---------gattgattttcttttcgttggatcaagcag--------------------------------------------------------------
|||| ||||||||||||||| | ||  | |||||||| ||||| || || ||||| ||||| |||||||| |||||||||||  |      |   ||| || ||     | |||           |||  || ||  |||  ||  |||  ||                                                               
TTGCTACTCCAAAGCAAATCAGGGAGGTGATGAAGGTTGATGGGCTCACCAACGACGAAGTGAAAAGCCATCTCCAGgtgagcaaacacccctcattttatttcagcaaccatttcttgaaacaaattagttctcgcttc-ctgattcattcatttcattattccatatcttgcttgttgatactgattttgatcatgtcatgcaaatattttcag

upper sequence: EFJ15083 (Selaginella moellendorffii), 5'ss of exon 4
lower sequence: GRMZM2G124540_T01 (Zea mays), 5'ss of exon 4
TTGCCACTCCAAAGCAAATCCGAGAACTCATGAAGGTAGATGGTCTTACAAACGATGAAGTAAAAAGCCACCTCCAGgtgagtgat--ccagtttcatctcgaagtcgattcgattgattttcttttcgttggatcaagcag---------------------------------------------------------------------------------
|||| ||||| ||||| ||| | ||  | |||||||| || || ||||||||||||||||| |||||||| |||||||||||  ||   | ||||  ||  |   |   |       |||| ||| | || |   |  || |                                                                                 
TTGCTACTCCGAAGCAGATCAGGGAGGTGATGAAGGTGGACGGGCTTACAAACGATGAAGTGAAAAGCCATCTCCAGgtgagcaatgatccgttttgtccgggcattatt-------atttccttctagtagcgccgcgccggtgcctatttcagacgaaggcgatgatatagcatcttgttttggaaactgattcgatcggcgtgtcgtgttcgtatttcag

upper sequence: EFJ15083 (Selaginella moellendorffii), 5'ss of exon 4
lower sequence: GRMZM2G171468_T02 (Zea mays), 5'ss of exon 4
TTGCCACTCCAAAGCAAATCCGAGAACTCATGAAGGTAGATGGTCTTACAAACGATGAAGTAAAAAGCCACCTCCAGgtgagtga----tccagtttcatctcgaagtcgattcgattgattttcttttcgttggatcaagcag-------------------------------------------------------------------------------
| || ||||| || || ||| | ||  | ||| | || || || ||||||||||||||||| |||||||| ||||||||| | |     |  | |||  ||| |   || |||   | |    | | |   || |   ||  ||                                                                               
TGGCTACTCCGAAACAGATCAGGGAGGTGATGCAAGTGGACGGGCTTACAAACGATGAAGTGAAAAGCCATCTCCAGgtgcgcgcgcgctttaattttgtctagggctctatttcttcgtccctgtatatcttagtagaactagtgcctgttccttttccatcatccttcggggtgatatggtatcttgtttggaaacttattggatcgttcgtgttcagaag

upper sequence: EFJ15083 (Selaginella moellendorffii), 5'ss of exon 4
lower sequence: GRMZM2G171468_T03 (Zea mays), 5'ss of exon 2
TTGCCACTCCAAAGCAAATCCGAGAACTCATGAAGGTAGATGGTCTTACAAACGATGAAGTAAAAAGCCACCTCCAGgtgagtga----tccagtttcatctcgaagtcgattcgattgattttcttttcgttggatcaagcag----------------------------------------------------------------------------
| || ||||| || || ||| | ||  | ||| | || || || ||||||||||||||||| |||||||| ||||||||| | |     |  | |||  ||| |   || |||   | |    | | |   || |   ||  ||                                                                            
TGGCTACTCCGAAACAGATCAGGGAGGTGATGCAAGTGGACGGGCTTACAAACGATGAAGTGAAAAGCCATCTCCAGgtgcgcgcgcgctttaattttgtctagggctctatttcttcgtccctgtatatcttagtagaactagtgcctgttccttttccatcatccttcggggtgatatggtatcttgtttggaaacttattggatcgttcgtgttcag

upper sequence: EFJ15083 (Selaginella moellendorffii), 5'ss of exon 4
lower sequence: GRMZM2G173882_T01 (Zea mays), 5'ss of exon 4
TTGCCACTCCAAAGCAAATCCGAGAACTCATGAAGGTAGATGGTCTTACAAACGATGAAGTAAAAAGCCACCTCCAGgtgagtgatccagtttcatctcgaagtcgattcgat-tgattt-------tcttttcgttggatcaagcag-------------------------------------------------------------------------------------------------------
||||||| |||||||| ||| | || || |||||||| || || || |||||||| ||||| ||||||||||| ||||| ||  ||||||   || ||     | ||   ||  |||  |       |||  |  |    ||  | ||                                                                                                       
TTGCCACCCCAAAGCAGATCAGGGAGCTGATGAAGGTGGACGGCCTCACAAACGACGAAGTGAAAAGCCACCTTCAGgttagcaatccagcagcagcttccccttgacatgacatgacatgcatccatctcattctcatctccgggagatgacgattcaattcactgcccttgtttaatttgttgtgaaataaataaaaaaaaaagaggatgctgacatggatctgtctgatgatggtgttggttcttcag

upper sequence: EFJ15083 (Selaginella moellendorffii), 5'ss of exon 4
lower sequence: GLYMA07G29490.1 (Glycine max), 5'ss of exon 4
TTGCCACTCCAAAGCAAATCCGAGAACTCATGAAGGTAGATGGTCTTACAAACGATGAAGTAAAAAGCCACCTCCAGgtgagtg-atccagtttcatctcgaagtcgattcgattgattttcttttcgttggatcaa-gcag------------------
   | ||||||||||||||  | |||||||||| ||||||||| || || || ||||||||||| || ||  | || ||||||  ||   ||| ||||||    |     |   | || ||   || |   ||| ||  ||                   
CAACTACTCCAAAGCAAATTAGGGAACTCATGAGGGTAGATGGCCTGACCAATGATGAAGTAAAGAGTCATTTACAAgtgagttcatattgttccatctccccttactgccttctaatgtttgatttg--agattaacacatggttgtttattattgcag

upper sequence: EFJ15083 (Selaginella moellendorffii), 5'ss of exon 4
lower sequence: GLYMA20G01260.1 (Glycine max), 5'ss of exon 4
TTGCCACTCCAAAGCAAATCCGAGAACTCATGAAGGTAGATGGTCTTACAAACGATGAAGTAAAAAGCCACCTCCAGgtgagtg-atccagtttcatctcgaagtcgattcgattgattttcttttcgttggatcaagcag--------------------
  || ||||||||||||||  | |||||||||| ||||||||| || || || ||||||||||| || ||  | || ||||||  ||   ||| ||||||    |   | |       |    |||  || |||    ||                     
CAGCTACTCCAAAGCAAATTAGGGAACTCATGAGGGTAGATGGCCTGACCAATGATGAAGTAAAGAGTCATTTACAAgtgagttcatattgttccatctccccttaattactgccttctaatgtttgatttgatattacatatggttgtttatcattgcag

upper sequence: EFJ15083 (Selaginella moellendorffii), 5'ss of exon 4
lower sequence: Vv07s0197g00060.t01 (Vitis vinifera), 5'ss of exon 4
TTGCCACTCCAAAGCAAATCCGAGAACTCATGAAGGTAGATGGTCTTACAAACGATGAAGTAAAAAGCCACCTCCAGgtgagtg---atccag-----tttcatctcgaagtcgattcgattgattttcttt-----tcgttggatcaa-gcag
  |||||||| || || || |||||||||||| | || || ||||| || ||||||||||||||||||||  | |||||| |||   |   ||     |||| | |  |  |   ||   | | |  || ||     |  |||   |   ||||
CAGCCACTCCTAAACAGATTCGAGAACTCATGCAAGTGGAAGGTCTCACTAACGATGAAGTAAAAAGCCATTTACAGgtgggtgttaacatagaagcctttctttttcagttttctttagtgggtcgtccttaaaagttcttgtccctctgcag