1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CGTTGCAGAGATCGTTTCAAAGGCCTACGATGTGCAAGGCAAAACCATTGGCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAGgtattagttttaacgaagtcttaaagctcgccacctttgttacatccatgcag
species | Selaginella moellendorffii |
transcript | EFJ13636 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAG GCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGACEST: gi|169029784|gb|FE441017.1|FE441017
genomic: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAGgtattagttt ... atccatgcagGCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGAC
EST: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAG GCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGACEST: gi|169106400|gb|FE507425.1|FE507425
genomic: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAGgtattagttt ... atccatgcagGCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGAC
EST: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAG GCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGACEST: gi|169067793|gb|FE473377.1|FE473377
genomic: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAGgtattagttt ... atccatgcagGCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGAC
EST: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAG GCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGACEST: gi|169056514|gb|FE464922.1|FE464922
genomic: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAGgtattagttt ... atccatgcagGCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGAC
EST: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAG GCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGACEST: gi|169048962|gb|FE454948.1|FE454948
genomic: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAGgtattagttt ... atccatgcagGCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGAC
EST: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAG GCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGACEST: gi|70670001|gb|DN838578.1|DN838578
genomic: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAGgtattagttt ... atccatgcagGCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGAC
EST: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAG GCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGACEST: gi|169062830|gb|FE472866.1|FE472866
genomic: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAGgtattagttt ... atccatgcagGCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGAC
EST: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAG GCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGACEST: gi|169067792|gb|FE473376.1|FE473376
genomic: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAGgtattagttt ... atccatgcagGCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGAC
EST: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAG GCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGACEST: gi|169104371|gb|FE503733.1|FE503733
genomic: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAGgtattagttt ... atccatgcagGCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGAC
EST: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAG GCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGACEST: gi|169087508|gb|FE494625.1|FE494625
genomic: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAGgtattagttt ... atccatgcagGCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGAC
EST: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAG GCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGACEST: gi|169079757|gb|FE491166.1|FE491166
genomic: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAGgtattagttt ... atccatgcagGCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGAC
EST: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAG GCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGACEST: gi|169079758|gb|FE491167.1|FE491167
genomic: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAGgtattagttt ... atccatgcagGCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGAC
EST: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAG GCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGACEST: gi|169088324|gb|FE492042.1|FE492042
genomic: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAGgtattagttt ... atccatgcagGCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGAC
EST: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAG GCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGACEST: gi|169106399|gb|FE507424.1|FE507424
genomic: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAGgtattagttt ... atccatgcagGCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGAC
EST: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAG GCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGACEST: gi|169101312|gb|FE502507.1|FE502507
genomic: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAGgtattagttt ... atccatgcagGCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGAC
EST: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAG GCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGACEST: gi|169101313|gb|FE502508.1|FE502508
genomic: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAGgtattagttt ... atccatgcagGCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGAC
EST: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAG GCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGACEST: gi|169104372|gb|FE503734.1|FE503734
genomic: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAGgtattagttt ... atccatgcagGCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGAC
EST: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAG GCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGACEST: gi|169060085|gb|FE468695.1|FE468695
genomic: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAGgtattagttt ... atccatgcagGCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGAC
EST: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAG GCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGACEST: gi|169078349|gb|FE490382.1|FE490382
genomic: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAGgtattagttt ... atccatgcagGCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGAC
EST: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAG GCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGACEST: gi|169048961|gb|FE454947.1|FE454947
genomic: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAGgtattagttt ... atccatgcagGCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGAC
EST: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAG GCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGACEST: gi|169088325|gb|FE492043.1|FE492043
genomic: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAGgtattagttt ... atccatgcagGCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGAC
EST: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAG GCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGAC
genomic: GCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAGgtattagttt ... atccatgcagGCGTTCGATTGCAACCTTTTGTATTACGATCGGGTGGCCATGCCCAGTGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTTGCAGAGATCGTTTCAAAGGCCTACGATGTGCAAGGCAAAACCATTGGCAGTGTGGGAGCTGGAAGAATTGGGTACCATTTGCTCAAGCGTCTCAAGgtattagttttaacgaagtcttaaagctcgccacctttgttacatccatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA