1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGAGTACATGGCACCCGAGATCTTACTCTCAAAGGGACATGGGAAGTCAGCTGACTGGTGGAGCCTTGGAATCCTGGTGTATGAGATGCTACACGGCATGgtaagagaaaccatccgtttcctttttcaagtgttcacgtcgtgttcttgcag
species | Selaginella moellendorffii |
transcript | EFJ13401 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTGACTGGTGGAGCCTTGGAATCCTGGTGTATGAGATGCTACACGGCATG CCCCCATTCACAAATCGCAACAAGAACAAGCTCCAGCAAGAGATAATCAAAEST: gi|169056047|gb|FE465599.1|FE465599
genomic: CTGACTGGTGGAGCCTTGGAATCCTGGTGTATGAGATGCTACACGGCATGgtaagagaaa ... gttcttgcagCCCCCATTCACAAATCGCAACAAGAACAAGCTCCAGCAAGAGATAATCAAA
EST: CTGACTGGTGGAGCCTTGGAATCCTGGTGTATGAGATGCTACACGGCATG CCCCCATTCACAAATCGCAACAAGAACAAGCTCCAGCAAGAGATAATCAAAEST: gi|169111823|gb|FE511203.1|FE511203
genomic: CTGACTGGTGGAGCCTTGGAATCCTGGTGTATGAGATGCTACACGGCATGgtaagagaaa ... gttcttgcagCCCCCATTCACAAATCGCAACAAGAACAAGCTCCAGCAAGAGATAATCAAA
EST: CTGACTGGTGGAGCCTTGGAATCCTGGTGTATGAGATGCTACACGGCATG CCCCCATTCACAAATCGCAACAAGAACAAGCTCCAGCAAGAGATAATCAAAEST: gi|169076821|gb|FE485864.1|FE485864
genomic: CTGACTGGTGGAGCCTTGGAATCCTGGTGTATGAGATGCTACACGGCATGgtaagagaaa ... gttcttgcagCCCCCATTCACAAATCGCAACAAGAACAAGCTCCAGCAAGAGATAATCAAA
EST: CTGACTGGTGGAGCCTTGGAATCCTGGTGTATGAGATGCTACACGGCATG CCCCCATTCACAAATCGCAACAAGAACAAGCTCCAGCAAGAGATAATCAAAEST: gi|169080057|gb|FE487917.1|FE487917
genomic: CTGACTGGTGGAGCCTTGGAATCCTGGTGTATGAGATGCTACACGGCATGgtaagagaaa ... gttcttgcagCCCCCATTCACAAATCGCAACAAGAACAAGCTCCAGCAAGAGATAATCAAA
EST: CTGACTGGTGGAGCCTTGGAATCCTGGTGTATGAGATGCTACACGGCATG CCCCCATTCACAAATCGCAACAAGAACAAGCTCCAGCAAGAGATAATCAAAEST: gi|169111822|gb|FE511202.1|FE511202
genomic: CTGACTGGTGGAGCCTTGGAATCCTGGTGTATGAGATGCTACACGGCATGgtaagagaaa ... gttcttgcagCCCCCATTCACAAATCGCAACAAGAACAAGCTCCAGCAAGAGATAATCAAA
EST: CTGACTGGTGGAGCCTTGGAATCCTGGTGTATGAGATGCTACACGGCATG CCCCCATTCACAAATCGCAACAAGAACAAGCTCCAGCAAGAGATAATCAAAEST: gi|169111664|gb|FE513995.1|FE513995
genomic: CTGACTGGTGGAGCCTTGGAATCCTGGTGTATGAGATGCTACACGGCATGgtaagagaaa ... gttcttgcagCCCCCATTCACAAATCGCAACAAGAACAAGCTCCAGCAAGAGATAATCAAA
EST: GAGATGGTACACGGCATG CCCCCATTCACAAATCGCAACAAGAACAAGCTCCAGCAAGAGATAATCAAA
genomic: GAGATGCTACACGGCATGgtaagagaaa ... gttcttgcagCCCCCATTCACAAATCGCAACAAGAACAAGCTCCAGCAAGAGATAATCAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGTACATGGCACCCGAGATCTTACTCTCAAAGGGACATGGGAAGTCAGCTGACTGGTGGAGCCTTGGAATCCTGGTGTATGAGATGCTACACGGCATGgtaagagaaaccatccgtttcctttttcaagtgttcacgtcgtgttcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG