1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGGTGATGTTCCTATGGAAGAAGGCGATGCTAAAGTGGAAAGTGCGGAGGGTACTGACAATGGAGCACCTCCAATGGAGGAACCAGTTGAAACTCAGAAGgtatgggtggtgtcgttctctttcgcatgttgtttacgtactatggtggcacatcttgcag
species | Selaginella moellendorffii |
transcript | EFJ12319 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTACTGACAATGGAGCACCTCCAATGGAGGAACCAGTTGAAACTCAGAAG GCCGAGCCTGTTAAGAAGAAGAAGACGAAACGGACGGATGTCCCGGTTACGEST: gi|169093128|gb|FE491808.1|FE491808
genomic: GTACTGACAATGGAGCACCTCCAATGGAGGAACCAGTTGAAACTCAGAAGgtatgggtgg ... catcttgcagGCCGAGCCTGTTAAGAAGAAGAAGACGAAACGGACGGATGTCCCGGTTACG
EST: GTACTGACAATGGAGCACCTCCAATGGAGGAACCAGTTGAAACTCAGAAG GCCGAGCCTGTTAAGAAGAAGAAGACGAAACGGACGGATGTCCCGGTTACGEST: gi|169048844|gb|FE456637.1|FE456637
genomic: GTACTGACAATGGAGCACCTCCAATGGAGGAACCAGTTGAAACTCAGAAGgtatgggtgg ... catcttgcagGCCGAGCCTGTTAAGAAGAAGAAGACGAAACGGACGGATGTCCCGGTTACG
EST: GTACTGACAATGGAGCACCTCCCATGGAGGAACCAGTTGAAACTCAGAAG GCCGAGCCTGTTAAGAAGAAGAAGACGAAACGGACGGATGTCCCGGTTACG
genomic: GTACTGACAATGGAGCACCTCCAATGGAGGAACCAGTTGAAACTCAGAAGgtatgggtgg ... catcttgcagGCCGAGCCTGTTAAGAAGAAGAAGACGAAACGGACGGATGTCCCGGTTACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGTGATGTTCCTATGGAAGAAGGCGATGCTAAAGTGGAAAGTGCGGAGGGTACTGACAATGGAGCACCTCCAATGGAGGAACCAGTTGAAACTCAGAAGgtatgggtggtgtcgttctctttcgcatgttgtttacgtactatggtggcacatcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA