1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AACAGCAGTGTTGTTCTTGGCGTTTCCTTGTGTCCTCCTGTTACTCAAGAACTTTTTATGGAGTGGCTGCTTCCCAGCTGTACCTGTGCAAGCCTACCAAgtaagtaactttggttttgtattcgctccattaaaatccttctgtctgtgtcag
species | Selaginella moellendorffii |
transcript | EFJ12166 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACTTTTTATGGAGTGGCTGCTTCCCAGCTGTACCTGTGCAAGCCTACCAA GCATGGCTGCTGTTCTTCTACACCAGCTTGGCACTGCGAGAAAACATTCTTEST: gi|70669921|gb|DN838498.1|DN838498
genomic: ACTTTTTATGGAGTGGCTGCTTCCCAGCTGTACCTGTGCAAGCCTACCAAgtaagtaact ... tctgtgtcagGCATGGCTGCTGTTCTTCTACACCAGCTTGGCACTGCGAGAAAACATTCTT
EST: ACTTTTTATGGAGTGGCTGCTTCCCAGCTGTACCTGTGCAAGCCTACCAA GCATGGCTGCTGTTCTTCTACACCAGCTTGGCACTGCGAGAAAACATTCTTEST: gi|169053304|gb|FE462579.1|FE462579
genomic: ACTTTTTATGGAGTGGCTGCTTCCCAGCTGTACCTGTGCAAGCCTACCAAgtaagtaact ... tctgtgtcagGCATGGCTGCTGTTCTTCTACACCAGCTTGGCACTGCGAGAAAACATTCTT
EST: CTTTTTATGGAGTGGCTGCTTCCCAGCTGTACCTGTGNCA-GCCTACCNA GCATGGCTGCTGTTTCT-CTACNAC-AGCTTGGCACTGCEST: gi|169031684|gb|FE437485.1|FE437485
genomic: CTTTTTATGGAGTGGCTGCTTCCCAGCTGTACCTGTG-CAAGCCTACCAAgtaagtaact ... tctgtgtcagGCATGGCTGCTGTT-CTTCTAC-ACCAGCTTGGCACTGC
EST: ACTTTTTATGGAGTGGCTGCTTCCCAGCTGTACCTGTGCAAGCCTACCAA GCATGGCTGCTGTTCTTCTACACCAGCTTGGCACTGCGEST: gi|169056974|gb|FE466201.1|FE466201
genomic: ACTTTTTATGGAGTGGCTGCTTCCCAGCTGTACCTGTGCAAGCCTACCAAgtaagtaact ... tctgtgtcagGCATGGCTGCTGTTCTTCTACACCAGCTTGGCACTGCG
EST: ACTTTTTATGGAGTGGCTGCTTCCCAGCTGTACCTGTGCAAGCCTACCAA GCATGGCTGCTGTTCTTCTACACCAGCTTGGCACTGCGAGAAAACATTCTTEST: gi|169032393|gb|FE440950.1|FE440950
genomic: ACTTTTTATGGAGTGGCTGCTTCCCAGCTGTACCTGTGCAAGCCTACCAAgtaagtaact ... tctgtgtcagGCATGGCTGCTGTTCTTCTACACCAGCTTGGCACTGCGAGAAAACATTCTT
EST: ACTTTTTATGGAGTGGCTGCTTCCCAGCTGTACCTGTGCAAGCCTACCAA GCATGGCTGCTGTTCTTCTACACCAGCTTGGCACTGCGAGAAAACATTCTT
genomic: ACTTTTTATGGAGTGGCTGCTTCCCAGCTGTACCTGTGCAAGCCTACCAAgtaagtaact ... tctgtgtcagGCATGGCTGCTGTTCTTCTACACCAGCTTGGCACTGCGAGAAAACATTCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACAGCAGTGTTGTTCTTGGCGTTTCCTTGTGTCCTCCTGTTACTCAAGAACTTTTTATGGAGTGGCTGCTTCCCAGCTGTACCTGTGCAAGCCTACCAAgtaagtaactttggttttgtattcgctccattaaaatccttctgtctgtgtcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG