1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CAGCGTGAATACGCAAGCTGATTTGAGGTCGCGGTATCTTCTTAACAGCACTATTGCTGGAGTGGAGAATGCGGACGTTATTCTCCTTGTTGGAACACAGgtaaggcttcgttttgctttgatttgctctccagtttttgaagttctgaagaacttttttgtgtttctactcag
species | Selaginella moellendorffii |
transcript | EFJ11043 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTATTGCTGGAGTGGAGAATGCGGACGTTATTCTCCTTGTTGGAACACAG GTGCGAACCGAGGCACCACTGCTGAACTTGCGAATCAGAAAGGCTGTGAGAEST: gi|169032485|gb|FE439592.1|FE439592
genomic: CTATTGCTGGAGTGGAGAATGCGGACGTTATTCTCCTTGTTGGAACACAGgtaaggcttc ... ttctactcagGTGCGAACCGAGGCACCATTACTGAACTTGCGAATCAGAAAGGCTGTGAGA
EST: CTATTGCTGGAGTGGAGAATGCGGACGTTATTCTCCTTGTTGGAACACAG GTGCGAACCGAGGCACCACTGCTGAACTTGCGAATCAGAAAGGCTGTGAGAEST: gi|169020459|gb|FE431706.1|FE431706
genomic: CTATTGCTGGAGTGGAGAATGCGGACGTTATTCTCCTTGTTGGAACACAGgtaaggcttc ... ttctactcagGTGCGAACCGAGGCACCATTACTGAACTTGCGAATCAGAAAGGCTGTGAGA
EST: CTATTGCTGGAGTGGAGAATGCGGACGTTATTCTCCTTGTTGGAACACAG GTGCGAACCGAGGCACCACTGCTGAACTTGCGAATCAGAAAGGCTGTGAGAEST: gi|169116479|gb|FE517504.1|FE517504
genomic: CTATTGCTGGAGTGGAGAATGCGGACGTTATTCTCCTTGTTGGAACACAGgtaaggcttc ... ttctactcagGTGCGAACCGAGGCACCATTACTGAACTTGCGAATCAGAAAGGCTGTGAGA
EST: CTATTGCTGGAGTGGAGAATGCGGACGTTATTCTCCTTGTTGGAACACAG GTGCGAACCGAGGCACCATTACTGAACTTGCGAATCAGAAAGGCTGTGAGAEST: gi|169044666|gb|FE452460.1|FE452460
genomic: CTATTGCTGGAGTGGAGAATGCGGACGTTATTCTCCTTGTTGGAACACAGgtaaggcttc ... ttctactcagGTGCGAACCGAGGCACCATTACTGAACTTGCGAATCAGAAAGGCTGTGAGA
EST: CTATTGCTGGAGTGGAGAATGCGGACGTTATTCTCCTTGTTGGAACACAG GTGCGAACCGAGGCACCATTACTGAACTTGCGAATCEST: gi|169031670|gb|FE437471.1|FE437471
genomic: CTATTGCTGGAGTGGAGAATGCGGACGTTATTCTCCTTGTTGGAACACAGgtaaggcttc ... ttctactcagGTGCGAACCGAGGCACCATTACTGAACTTGCGAATC
EST: GGAGAATGCGGACGTTATTCTCCTTGTTGGAACACAG GTGCGAACCGAGGCACCATTACTGAACTTGCGAATCAGAAAGGCTGTGAGAEST: gi|169025923|gb|FE432884.1|FE432884
genomic: GGAGAATGCGGACGTTATTCTCCTTGTTGGAACACAGgtaaggcttc ... ttctactcagGTGCGAACCGAGGCACCATTACTGAACTTGCGAATCAGAAAGGCTGTGAGA
EST: CTATTGCTGGAGTGGAGAATGCGGACGTTATTCTCCTTGTTGGAACACAG GTGCGAACCGAGGCACCACTGCTGAACTTGCGAATCAGAAAGGCTGTGAGA
genomic: CTATTGCTGGAGTGGAGAATGCGGACGTTATTCTCCTTGTTGGAACACAGgtaaggcttc ... ttctactcagGTGCGAACCGAGGCACCATTACTGAACTTGCGAATCAGAAAGGCTGTGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGCGTGAATACGCAAGCTGATTTGAGGTCGCGGTATCTTCTTAACAGCACTATTGCTGGAGTGGAGAATGCGGACGTTATTCTCCTTGTTGGAACACAGgtaaggcttcgttttgctttgatttgctctccagtttttgaagttctgaagaacttttttgtgtttctactcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA