1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCAAGCGATGGCTGAGACGCTATGGCGAGCAGGAGGAAACCAAAGAGCTGTGCTGGCTGTTATGGACATACCAGACGCTAGCGAGGAAGAGCAAGACAGAgtacggtgttggtttgcacatatgctgatactgatggtgctgcccag
species | Selaginella moellendorffii |
transcript | EFJ11004 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGCTGGCTGTTATGGACATACCAGACGCTAGCGAGGAAGAGCAAGACAGA GTTTTGGAAAGCGTGGCTCTGGATTCGGCCACCGGACTGCGCGAAGCTGTTEST: gi|169095343|gb|FE499412.1|FE499412
genomic: TGCTGGCTGTTATGGACATACCAGACGCTAGCGAGGAAGAGCAAGACAGAgtacggtgtt ... tgctgcccagGTTTTGGAAAGCGTGGCTCTGGATTCGGCCACCGGACTGCGCGAAGCTGTT
EST: TGCTGGCTGTTATGGACATACCAGACGCTAGCGAGGAAGAGCAAGACAGA GTTTTGGAAAGCGTGGCTCTGGATTCGGCCACCGGACTGCGCGAAGCTGTTEST: gi|169096367|gb|FE498122.1|FE498122
genomic: TGCTGGCTGTTATGGACATACCAGACGCTAGCGAGGAAGAGCAAGACAGAgtacggtgtt ... tgctgcccagGTTTTGGAAAGCGTGGCTCTGGATTCGGCCACCGGACTGCGCGAAGCTGTT
EST: TGCTGGCTGTTATGGACATACCAGACGCTAGCGAGGAAGAGCAAGACAGA GTTTTGGAAAGCGTGGCTCTGGATTCCGCCACCGGACTGCGCGAAGCTGTTEST: gi|169086797|gb|FE494122.1|FE494122
genomic: TGCTGGCTGTTATGGACATACCAGACGCTAGCGAGGAAGAGCAAGACAGAgtacggtgtt ... tgctgcccagGTTTTGGAAAGCGTGGCTCTGGATTCGGCCACCGGACTGCGCGAAGCTGTT
EST: TGCTGGCTGTTATGGACATACCAGACGCTAGCGAGGAAGAGCAAGACAGA GTTTTGGAAAGCGTGGCTCTGGATTCGGCCACCGGACTGCGCGAAGCTGTT
genomic: TGCTGGCTGTTATGGACATACCAGACGCTAGCGAGGAAGAGCAAGACAGAgtacggtgtt ... tgctgcccagGTTTTGGAAAGCGTGGCTCTGGATTCGGCCACCGGACTGCGCGAAGCTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAAGCGATGGCTGAGACGCTATGGCGAGCAGGAGGAAACCAAAGAGCTGTGCTGGCTGTTATGGACATACCAGACGCTAGCGAGGAAGAGCAAGACAGAgtacggtgttggtttgcacatatgctgatactgatggtgctgcccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA