Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACAAGCCTACCTGTTTGATGGATACTGGGAGGATATTGGCACAATCGAGGCTTTTTACAATGCCAACATAGGATTGACTAAGAGCCCTCCTGAATTTAGgtgcacaagttttcaaggtttttcttatcaatacttgacgggacattcgtggaattttgcttctcag

Basic information

species Selaginella moellendorffii
transcript EFJ09564
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ09564 (Selaginella moellendorffii), 5'ss of exon 4
lower sequence: GLYMA14G01290.1 (Glycine max), 5'ss of exon 5
TACAAGCCTACCTGTTTGATGGATACTGGGAGGATATTGGCACAATCGAGGCTTTTTACAATGCCAACATAGGATTGACTAAGAGCCCT---CCTGAATTTAGgtgca---caagttttcaaggtttttcttatcaatacttgacgggacattcgtggaattttgcttctcag---------------------------------------
   |||| ||| ||| |||||| |||||||| || ||||| |||||||||||||| || ||||| ||  | ||| | || || |  |||   ||||| || ||||  |   |   |||   |  |   || |||  | |  ||      || |  | |  |||||    || |                                       
---AAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattgcctatttgatatatccatcatattgacaaatg-tatttcaatgatagtgttttgtggttctgatgtttatgtgttcatgcgttttggcatattgattgcag

upper sequence: EFJ09564 (Selaginella moellendorffii), 5'ss of exon 4
lower sequence: PP1S2_337V6.1 (Physcomitrella patens), 5'ss of exon 5
TACAAGCCTACCTGTTTGATGGATACTGGGAGGATATTGGCACAATCGAGGCTTTTTACAATGCCAACATAGGATTGACTAAGAGCCC---TCCTGAATTTAGgtgcac-----aagttttcaaggtttttcttatcaatacttgacgggacattcgtggaattttgcttctcag------------------------------
   | |||||| | |||||||| |||||||| |||||||| || || || ||||||||||| || ||| ||||| | || ||||  ||   |||||| |||||||| |      |||  |  || | |  || |    | |  || | | ||| |  |||||| |      |||                               
---AGGCCTACTTATTTGATGGCTACTGGGAAGATATTGGAACTATTGAAGCTTTTTACAACGCAAACTTAGGAATCACGAAGAAGCCCGTTCCTGATTTTAGgtgaattgtgtaagactgtaatgatagtcatggtcagaaatgcctgaacact--tggaatctgcacggtcaaagataaaaaaaaatccaggaatagtttaat