1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTGATGGAGTATGCACACCTTTTGGACCTCGCTGATCAGTGCGAAGATCCATACTTGAGGATGGTCTATGCTTgtaagtggtgaattctctttctttctcagcctggggtgctgattcggattgttttcttctacag
species | Selaginella moellendorffii |
transcript | EFJ08612 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGACCTCGCTGATCAGTGCGAAGATCCATACTTGAGGATGGTCTATGCTT CGTGCTGGGCTATCTCTGTATATTATGCTTACGAACGTGC-GTGGAAGCCAEST: gi|169025463|gb|FE436077.1|FE436077
genomic: GGACCTCGCTGATCAGTGCGAAGATCCATACTTGAGGATGGTCTATGCTTgtaagtggtg ... tcttctacagCGTGCTGGGCTATCTCTGTATATTATGCTTACGAGCG-GCCGTGGAAGCCT
EST: GGACCTCGCTGATCAGTGCGAAGATCCATACTTGAGGATGGTCTATGCTT CGTGCTGGGCTATCTCTGTATATTATGCTTACGAACGTGC-GTGGAAGCCA
genomic: GGACCTCGCTGATCAGTGCGAAGATCCATACTTGAGGATGGTCTATGCTTgtaagtggtg ... tcttctacagCGTGCTGGGCTATCTCTGTATATTATGCTTACGAGCG-GCCGTGGAAGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGATGGAGTATGCACACCTTTTGGACCTCGCTGATCAGTGCGAAGATCCATACTTGAGGATGGTCTATGCTTgtaagtggtgaattctctttctttctcagcctggggtgctgattcggattgttttcttctacag
- - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG