Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACGATGATCATCGAAGGAAAGGGGAGCCTCTTATGACTGAGCCCGAATTCCGGGGGTATTATGCGCTTCTCAAACTCGACCAGCATCCTGGTTTTGCCgtaagttttcatcatagtcttgaaagctgtacattttcttatcctctgtttccag

Basic information

species Selaginella moellendorffii
transcript EFJ06873
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ06873 (Selaginella moellendorffii), 5'ss of exon 4
lower sequence: AT3G06290.1 (Arabidopsis thaliana), 5'ss of exon 13
GTACGATGATCATCGAAGGAAAGGGGAGCCTCTTATGACTGAGCCCGAATTCCGGGGGTATTATGCGCTTCTCAAACTCGACCAGCATCCTGGTTTTGCCgtaagtt-ttcatcatagtcttgaaagctgtacattttcttatcctctgtttccag--------------------
||| ||||||||  | | ||||||     || ||   || ||    || || || || |||||||| ||||||||||||||| |||||||||| | |   ||||||  |||    |    ||| |  | | |   | |  ||   |||    ||                      
GTATGATGATCACAGGAAGAAAGGAATAACTGTTCCTACAGAAAAAGAGTTTCGTGGCTATTATGCCCTTCTCAAACTCGACAAGCATCCTGGCTATAAGgtaagtccttctgggtgaatttgcagtcagaattgtgtgctaagttcttaacccgacaataaattcttcttgttag