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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCATGGCATGGATTCTTGACGAATACTCTAAGTTCCACGGGTATTCGCCAGCAATAGTAACTGGAAAGCCACTTgtaagcttgtttcttgatgatgatgtgatttttccttgatgatgatgatataattttttttgtttctcag

Basic information

species Selaginella moellendorffii
transcript EFJ06180
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ06180 (Selaginella moellendorffii), 5'ss of exon 4
lower sequence: GRMZM2G178415_T02 (Zea mays), 5'ss of exon 5
ACCATGGCATGGATTCTTGACGAATACTCTAAGTTCCACGGGTATTCGCCAGCAATAGTAACTGGAAAGCCACTTgtaagcttgtttcttgatgatgatgtgatttttccttgatgatgatgatataatttt----ttttgtttctcag--------------------------
|| ||||||||||| |||||||||||||| |||||||| || || || || ||  | || || ||||||||  | ||||||   | |||  |      | | |   |   |   |  |||  |     ||||    |     || | |                           
ACAATGGCATGGATACTTGACGAATACTCAAAGTTCCATGGTTACTCACCTGCTGTTGTGACAGGAAAGCCTGTGgtaagcaactatctatactgcattttcaacatgtatgtgtactgaaaacgatgttttgagatcaaagttgtaaaatgctctgaagatttataaaaggtgg

upper sequence: EFJ06180 (Selaginella moellendorffii), 5'ss of exon 4
lower sequence: AT5G18170.1 (Arabidopsis thaliana), 5'ss of exon 4
ACCATGGCATGGATTCTTGACGAATACTCTAAGTTCCACGGGTATTCGCCAGCAATAGTAACTGGAAAGCCACTTgtaagcttgtttcttgatgatgat-gtgatttttccttgatgatga-tgatataattttttttgtttctcag----------------
|| ||||| ||||||||||| |||||||||||||| || || || ||||| ||| | || |||||||| ||  |||||||        |  |  || ||    || ||   ||| | |||| || | |||     |   | | | |                 
ACAATGGCTTGGATTCTTGATGAATACTCTAAGTTTCATGGATACTCGCCTGCAGTTGTGACTGGAAAACCCATTgtaag--------taaagaataatcacaatcttgttttgctaatgactggtttaaccacctgaatgtttaatgatgtttatgaaccag

upper sequence: EFJ06180 (Selaginella moellendorffii), 5'ss of exon 4
lower sequence: Vv00s1491g00010.t01 (Vitis vinifera), 5'ss of exon 2
ACCATGGCATGGATTCTTGACGAATACTCTAAGTTCCACGGGTATTCGCCAGCAATAGTAACTGGAAAGCCACTTgtaagctt-------------gtttcttgatgatgatgtgatttttccttgatgatgatg---atataattttttttgtttctcag
|| |||||||||||||| || |||||||| ||||| || ||| |||| || ||| | || || ||||||||| |||||||  |             |   |  |  |   || |  ||     |  | |   |||   |   || || || ||  | | ||
ACGATGGCATGGATTCTGGATGAATACTCAAAGTTTCATGGGCATTCACCTGCAGTTGTTACAGGAAAGCCAATTgtaagtatcaaggagggagaggaaaccagtggtcaatatacttcgaattgaaggccaatgtccacccaaattattctgcattttag