| 1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
| 21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' | 32 5' 3' | 33 5' 3' | 34 5' 3' | 35 5' 3' | 36 5' 3' | 37 5' 3' | 38 5' 3' | 39 5' 3' | 40 5' 3' |
| 41 5' 3' | 42 5' 3' | 43 5' 3' | 44 5' 3' | 45 5' 3' | 46 5' 3' | 47 5' 3' | 48 5' 3' | 49 5' 3' | 50 5' 3' |
TTGCACACTGCAAACGGGGAACCCTGCATCTGAGGCACGTGCTTCATTGATCAGGAGAATGTGGCGGGATCGTATTCGGGGAGCGAAAAGAAACGTTGAGgtatatttatttcgttcaagcgacgtatatgttgcctgtttttttttgtag
| species | Selaginella moellendorffii |
| transcript | EFJ26294 |
| intron # | 33 |
| splice site | 5' |
| intron type | U2 |
| atgc | intron | ATGC | exonic elements by Pertea et al. |
| ATGC | exon | atgc | putative intronic elements |
| ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGCACACTGCAAACGGGGAACCCTGCATCTGAGGCACGTGCTTCATTGATCAGGAGAATGTGGCGGGATCGTATTCGGGGAGCGAAAAGAAACGTTGAGgtatatttatttcgttcaagcgacgtatatgttgcctgtttttttttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA