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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAAGGCGGCTATTTCAATGCGATCATGAGCTTTCCCGGGAATTATCCAAACAGTCCTCCCAGTGTGAGATTCACTTCCGATATGTGGCATCCAAATGgtaaccaagctctaccgatggaactcttctctagctgactttgtgaatctcgcgag

Basic information

species Selaginella moellendorffii
transcript EFJ37995
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ37995 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: LOC_Os01g62244.3 (Oryza sativa), 5'ss of exon 1
--CGAAGGCGGCTATTTCAATGCGATCATGAGCTTTCCCGGGAATTATCCAAACAGTCCTCCCAGTGTGAGATTCACTTCCGATATGTGGCATCCAAATGgtaaccaagctctaccg--atggaactcttctctagctg---actttgtgaatctcgcgag-----------------------
   || || || || || ||||| || |||||||||||   ||||||||| ||||||||||| | ||| ||||| || || || |||||||||||||||||| | |   |   |  |  |    |   |||| || ||      |   | | | |  |                          
AGTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttcctcattgtaacttcatgtttctgtaactccatgatccataattttaacacagcataatattggtcaattgccag

upper sequence: EFJ37995 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: LOC_Os01g62244.1 (Oryza sativa), 5'ss of exon 3
CGAAGGCGGCTATTTCAATGCGATCATGAGCTTTCCCGGGAATTATCCAAACAGTCCTCCCAGTGTGAGATTCACTTCCGATATGTGGCATCCAAATGgtaaccaagctctaccg--atggaactcttctctagctg---actttgtgaatctcgcgag-----------------------
 || || || || || ||||| || |||||||||||   ||||||||| ||||||||||| | ||| ||||| || || || |||||||||||||||||| | |   |   |  |  |    |   |||| || ||      |   | | | |  |                          
TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttcctcattgtaacttcatgtttctgtaactccatgatccataattttaacacagcataatattggtcaattgccag