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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCACCGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACAACATCTACGGGCCTTTTGGTACCTGGAAAGgtgagcttagattcttggaacttcctttttcttctcttgctcgaagcttagagtgtgatgggtgactgacaaatcgatctcacag

Basic information

species Selaginella moellendorffii
transcript EFJ37510
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ37510 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: LOC_Os10g28200.1 (Oryza sativa), 5'ss of exon 4
TGCA-CCGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACAACATCTACGGGCCTTTTGGTACCTGGAAAGgtg--agcttag---attcttggaacttcctttttcttctcttgctcga--agcttagagtgtgatgggtgactgacaaatcgatctcacag
 ||| | || ||||| |||||||||||||||||||| ||||| || ||||||||  |||| |||||||||||||| || || || ||||| || |||||||||   || |||    |||||   |  |       | | ||  | || |   | | |  | |    | |   |  || |              
-GCAACTGAGGAGCTCTGCAAGCACTACACCAAGGACTTTGGCATTGAGTGCCGTGTTGGCCGCTTCCACAACATATATGGCCCCTTTGGAACATGGAAAGgtagaagtttaaccaattctccaagttattgaactgtacttgtactggggcatccttaactcaatttgtcaatggatag-------------

upper sequence: EFJ37510 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: GRMZM2G124434_T01 (Zea mays), 5'ss of exon 4
TGCA-CCGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACAACATCTACGGGCCTTTTGGTACCTGGAAAGgtgagctta-----gattcttggaacttcctttttcttctcttgctcgaagcttagagtgtgatgggtgactgacaaatcgatctcacag
 ||| |||| |||||||||||||||||||||||||| ||||| |||||||||||  | || |||||||||||||||||||| ||||| || || ||||||||||| | ||       || |  |  ||     | |    || |     || |  |  |  ||||     | ||     |   |||  |||
-GCAACCGAGGAGCTGTGCAAGCACTACACCAAGGACTTTGGCATCGAGTGCCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAGgtgaacctactaccagttttctgggctgtggctgtgaggtcataac--aatccaacggcctgataaaaaaatgctctctttgtctatcag

upper sequence: EFJ37510 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: GRMZM2G138907_T01 (Zea mays), 5'ss of exon 4
TGC-ACCGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACAACATCTACGGGCCTTTTGGTACCTGGAAAGgtgagcttagattcttggaact-----tcctttttcttctcttgctcgaagcttagagtgtgatgggtgac----tgacaaatcgatctcacag--------
 || || || ||||||||||||||||| || ||||||||||| ||||||||||||||||| ||||| |||||||| || || || || || || ||||||||| || ||    ||| | | ||     |  |||  |   ||||  | |  |||     | |  | | ||||    |   |  |  ||  |   |        
-GCGACTGAGGAGCTGTGCAAGCACTATACAAAGGATTTTGGCATCGAGTGCCGGATTGGTCGCTTTCACAACATATATGGTCCCTTCGGCACATGGAAAGgtcagtttgctatctggtagctagtagtattttgccagttctttgttggtgctatcgattttctagatgacgttgtcctatgtttattgcttggcaatatag

upper sequence: EFJ37510 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: GLYMA10G30400.1 (Glycine max), 5'ss of exon 3
TGCACC-GAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACAACATCTACGGGCCTTTTGGTACCTGGAAAGgtgagcttagattc---ttggaacttcctttttcttctcttgctcgaagcttagagtgtgatgggtgactgacaaatcgat---ctcacag-------------------------------------
 ||| | || ||  | ||||||||||| | ||||||||||||||| |||||||| |||||| | ||||||||||| ||||| |||||||| || ||||||||   | ||         ||| ||  |  | |   ||    |   | ||      |   || | |     | | |  | | |   ||  | |                                     
-GCAACAGAGGAATTATGCAAGCACTATAACAAGGATTTTGGAATTGAGTGCCGCATTGGGAGGTTCCACAACATATACGGTCCTTTTGGGACATGGAAAGgcatgtttttcactgaattgaaagcttttatagttttgactttaccaaatgggtaaattggtagtcattttatattttggtaacctttcggatttaataagtttgtgttttgttgttttgtcatacag

upper sequence: EFJ37510 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: GLYMA20G36740.2 (Glycine max), 5'ss of exon 4
TGCACC-GAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACAACATCTACGGGCCTTTTGGTACCTGGAAAGgtgagctt-agatt---cttggaacttcctttttcttctcttgctcgaagcttagagtgtgatgggtgactgacaaatcgat---ctcacag-------------------------------------
 ||| | || ||  | ||||||||||| | ||||||||||||||| |||||||| |||||| | ||||||||||| ||||| |||||||| || ||||||||   |||| | | |    |   |||||   |  | || ||||   | ||      | | || | |     | |    | | |   ||    |                                     
-GCAACAGAGGAATTATGCAAGCACTATAACAAGGATTTTGGAATTGAGTGCCGCATTGGGAGGTTCCACAACATATACGGTCCTTTTGGGACATGGAAAGgcatgctttacactgaattgaaaacttttatagttttgtctttaccaaatgggtaaat-tggtagacattttatgttttggtaaccttttggatttaataagtttgtgttttgttgttttgtcatacag

upper sequence: EFJ37510 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: GLYMA19G43400.1 (Glycine max), 5'ss of exon 4
TGCA-CCGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACAACATCTACGGGCCTTTTGGTACCTGGAAAGgtgagct-tagatt--cttggaacttcct----ttttcttctcttgctcga-agcttagagtgtgatgggtgactgacaaatcgatctcacag----------------------------
 ||| | |||||| | |||||||| || | ||||||||||||||| ||||||||||||||| | ||||| ||||| || || |||| ||| || ||||| |||  | | | || |   ||| || ||  |    || |  | | |   || | |   ||| |     |   |    | |   | ||| | |||                             
-GCAACAGAAGAGTTATGCAAGCATTATAACAAGGATTTTGGAATTGAGTGCCGGATTGGGAGATTCCATAACATATATGGTCCTTATGGGACATGGAAGGgtatgttcttgactgaattgcaagtttttgcagttgttgtatttgagtcaataaactagtggacattcttttgtagccttttggatttaacaagtttgttgctttgtgttttgtcatatag

upper sequence: EFJ37510 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: GLYMA03G40720.1 (Glycine max), 5'ss of exon 4
TGCA-CCGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACAACATCTACGGGCCTTTTGGTACCTGGAAAGgtgag--cttagattc-ttggaacttcct-----ttttcttctcttgctcgaagcttagagtgtgatgggtgactgacaaatcgatctcacag----------------------------
 ||| | |||||| | |||||||| || | ||||||||||||||| |||||||| |||||| | ||||| ||||| || || |||| ||| || ||||| |||  |  |||   | | ||| || ||  |     | || |  |   |   | ||  | | | |   |   |    | |   | ||| | |||                             
-GCAACAGAAGAGTTATGCAAGCATTATAACAAGGATTTTGGAATTGAGTGCCGCATTGGGAGATTCCATAACATATATGGTCCTTATGGGACATGGAAGGgtatgttcttgactgcattgcaagtttttgcggttgttgtatttaagtcagtagacttgtgggcattcttttgtagccttttggatttaacaagtttgttgctttgtgttttgtcatatag

upper sequence: EFJ37510 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: Vv05s0020g04510.t01 (Vitis vinifera), 5'ss of exon 4
TGCA-CCGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACAACATCTACGGGCCTTTTGGTACCTGGAAAGgtgagctta-------gattc---ttggaa------cttcctttttcttctcttgctcgaagcttagagtgtgatgggtgactgacaaatcgatctcacag
 ||| | || ||| | |||||||||||||| ||||| |||||||| ||||| || ||||| || ||||| || || || || |||||||| || ||||||||| |||||         ||||   |||||        || | || | | || |||   |   ||   | |    |  ||  ||      || ||   |   
-GCAACTGAGGAGTTATGCAAGCACTACACTAAGGACTTTGGAATTGAGTGTCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgcaattgtaattccgtttggatgatggtttttccttctttccttttgggtgtttctgttaatacattttgtttctcctttttccattatag--

upper sequence: EFJ37510 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: PP1S98_250V6.1 (Physcomitrella patens), 5'ss of exon 3
TGCACCGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACAACATCTACGGGCCTTTTGGTACCTGGAAAGgtgagctta-gattcttggaacttcctt---tttcttctcttgctcgaagcttagagtgtgatgggtgactgacaaatcgatctcacag--------------------------------------------------------------------
  ||| || ||| |||||||||| ||||| ||||| || || || |||||||| |||||||| ||||||||||||||||| || |  || || ||||| ||| |||  |   | | | ||| |||      |  | || ||  |     | | | | |   ||  | | ||          |||                                                                         
GCCACAGAGGAGTTGTGCAAGCATTACACAAAGGACTTCGGCATGGAGTGCCGAATTGGGCGTTTCCACAACATCTACGGACCCTACGGAACATGGAAGGgtaagcaaacagtccatcgaaattctccaaatcacctcactgacattgtgttcacatttgcatttgcggcttcttttcttttcttttctttcttgtgttttaagcttccctataggcctgttcattgaagccaagtatgagatttccttctgctcag

upper sequence: EFJ37510 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: PP1S171_56V6.2 (Physcomitrella patens), 5'ss of exon 3
TGCACCGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACAACATCTACGGGCCTTTTGGTACCTGGAAAGgtga------gcttagattcttggaacttcctttttcttct-----cttgctcgaagcttaga-gtgtgatgggt-gactgacaaatcgatctcacag--
  ||| || |||||||| | |||||| || ||||| || || || ||||| || ||||| || ||||||||||||||||| || | ||| |||||||| ||| |      |    | | || |  | || |  | |||  |     ||   |  ||   || | || ||    |  | | ||  ||||    |       
GCCACGGAGGAGCTGTGTAGGCACTATACAAAGGACTTCGGCATGGAGTGTCGCATTGGTCGTTTCCACAACATCTACGGTCCCTATGGAACCTGGAAGGgtaataattcgtaaggctcctcgtcattttcactatctcttaaaaactgatttcaaatctacatgtttgcaatgcagtcagaagaatcctcattttgagc