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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGATTTTGCGGCAACTAAAGCACGAGAACATTATAGAAATGCTGGATGCATTTGAAAGCCCACAGGAGTTTTGTGTCGTGACAGAATTTGCACAGgcaagtgtaacattttctttttgtttctggtgtattttttcatttttcttttctagtgtgtggttactcacatttttatcattgttctttctag

Basic information

species Selaginella moellendorffii
transcript EFJ37043
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ37043 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: GRMZM2G062524_T02 (Zea mays), 5'ss of exon 3
CAGATTTTGCGGCAACTAAAGCACGAGAACATTATAGAAATGCTGGATGCATTTGAAAGCCCACAGGAGTTTTGTGTCGTGACAGAATTTGCACAGgcaagtgtaacattttctttttgtttctggtgtattttttcattttt------cttttctagtgtgtggtta-ctcacatttttatcattgttctttctag
   ||  |  || |||| || || |||||||| || |||||| | ||||| ||||||| ||| |||||||||||||| || ||||| ||||| |||| |      |     ||  |||| ||    |||  ||| |||| |||       ||   | || ||  | |  || ||  |  |   | || |  |   ||
---ATCCTAAGGAAACTCAAACATGAGAACATAATTGAAATGATCGATGCCTTTGAAACCCCTCAGGAGTTTTGTGTTGTCACAGAGTTTGCTCAGgtacacaagaa---ctcagtttgattaccttgtcctttctcatctttgactggtttcaattgtttgcagctggctaactctaatgaaaatgcttgtctcag

upper sequence: EFJ37043 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: GLYMA10G22860.1 (Glycine max), 5'ss of exon 3
CAGATTTTGCGGCAACTAAAGCACGAGAACATTATAGAAATGCTGGATGCATTTGAAAGCCCACAGGAGTTTTGTGTCGTGACAGAATTTGCACAGgcaagtgtaacattttctttttgtttctggtgtattttttcatttttcttttctagtgtgtggttactcacatttttatcattgttctttctag--------------------------------------------------------------------------------
   || || ||  |  ||||||| |  || |||||  ||||||| ||| | ||||||||||| || || |||||||| || |||||||||||||| | ||   | |  | |  |||  |||   ||| |   | ||  || |   |||  |    ||    ||| ||   || ||   || ||    ||                                                                                 
---ATCTTACGAAAGTTAAAGCATGGAAATATTATTCAAATGCTCGATTCCTTTGAAAGCCCGCAAGAATTTTGTGTTGTTACAGAATTTGCACAAgtaa---tcatctgtattttcagttgacggtttgactgttacttctatatttgaaa---gttaacacttaccccttaataggtgatccaattatactcagctatctgatagtgaaacaggaaactgtgaattattagagatgctgtcaagctgattatattttttattttacag

upper sequence: EFJ37043 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: GLYMA20G16860.1 (Glycine max), 5'ss of exon 3
CAGATTTTGCGGCAACTAAAGCACGAGAACATTATAGAAATGCTGGATGCATTTGAAAGCCCACAGGAGTTTTGTGTCGTGACAGAATTTGCACAGgcaagtgta-acattttctttttgtttctggtgtattttttcatttttcttttctagtgtgtggttactcacatttttatcattgttctttctag----------------------------------------------------------------
   || ||  |  |  | ||||| |  || |||||  ||||||| ||| | ||||||||||| || || |||||||| || |||||||||||||| | ||   |   |||||||  ||      | |  |  |  || |   ||      ||     |  ||  | |  |   ||| | |   || |||                                                                  
---ATCTTAAGAAAGTTGAAGCATGGAAATATTATTCAAATGCTTGATTCCTTTGAAAGCCCGCAAGAATTTTGTGTTGTTACAGAATTTGCACAAgtaatcatctgcattttcagttgacggtttgattgatacttgaaagttaccacttaccccttaattggtgatctaagtat-actcagctatctgattgtggaacaggacactgaattattagagatgctgttgagctgattatattttttattttgcag

upper sequence: EFJ37043 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: PP1S53_93V6.1 (Physcomitrella patens), 5'ss of exon 3
CAGATTTTGCGGCAACTAAAGCACGAGAACATTATAGAAATGCTGGATGCATTTGAAAGCCCACAGGAGTTTTGTGTCGTGACAGAATTTGCACAGgcaagtgtaacattttctttttgtttctggt-gtattttttcatt---------tttcttttctagtgtgtggttactcacatttttatcattgttctttctag-
   || ||||||||| ||||||| ||||| || || |||||||| ||||| ||||||||||| |||||||| ||||| ||||| || ||||| |||| | ||    | || |     ||  |||  | | || | |||||          ||| ||| | |  || |    | |||  |    |     |  ||| |||| 
---ATATTGCGGCAATTAAAGCATGAGAATATCATTGAAATGCTTGATGCCTTTGAAAGCCCCCAGGAGTTCTGTGTTGTGACTGAGTTTGCTCAGgtatgt----ccttctgcaagtgcatctcattgcatctcttcatcggagtgcaatttatttacaaaagtcttacaattcat-tgcggaaggaaggccttcctagt

upper sequence: EFJ37043 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: PP1S72_260V6.1 (Physcomitrella patens), 5'ss of exon 3
CAGATTTTGCGGCAACTAAAGCACGAGAACATTATAGAAATGCTGGATGCATTTGAAAGCCCACAGGAGTTTTGTGTCGTGACAGAATTTGCACAGgcaagtgtaacattttctttttgtttctggtgtattttttcatttttcttttctagtgtgtggttactcacatttttatcattgttctttctag-----
            ||||| ||||| ||||| || ||||||||||| ||||| ||||||||    |||||||||||||| ||||| ||  |||| |||  | |     |   | ||  ||||||      || | | |    |  |||| | |   | | |  | | | |||   |  |  |  |   || |     
------------CAACTTAAGCATGAGAATATCATAGAAATGCTCGATGCTTTTGAAAGTGACCAGGAGTTTTGTGTAGTGACCGAGATTgctcagctatgctcttctcctactgcttgttttgatcataatatat----tccctttacgataatcttgaaattta-attccgaagaaggccccggctggccctt