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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTATCAAGTCGACTGGCCACATACAGATCTTGTATGGAAACCTTGCTCCCGATGGCTCTATGCTTTCAGCGCTGTCTGAGAATCCTCAAAGCTTCAAGgtatgctttttttctctcagtccagagcaagatataagtcactggtgatcggtgaaattctcagggctccgtgattgttatgagggtggtccgggaatgcctgagatgctaacacctacaagtgggatcatggatggtatctaatttctag

Basic information

species Selaginella moellendorffii
transcript EFJ36482
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ36482 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: GLYMA13G27810.1 (Glycine max), 5'ss of exon 11
GCCTATCAAGTCGACTGGCCACATACAGATCTTGTATGGAAACCTTGCTCCCGATGGCTCTATGCTTTCAGCGCTGTCTGAGAATCCTCAAAGCTTCAAGgtatgctttttttctctcagtccagagcaagatataagtcactggt-gatcggtgaaattctcagggctccgtgattgttatgagggtggtccgggaatgcctgagatg-ctaacacctacaagtgggatcatggatggtatctaatttctag
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-------------------------------------GAAAGTGGTTGTAATCAGGGGAGAGGGACCCAAGGGTGGTCCGGGAATGCCTGAGATGTTAACACCAACA-----------AGTGCAATAATGGGTGCAGGTCTTGGAAAGgtctgttttgtcttttttattctat--ttacttagtttgtagttgtgatctgtccatcatgactatggaccgagataactaacctgtagagtttttaaaatt---