1 5' 3' | 2 5' 3' | 3 5' 3' |
ACTTCCGCTTGTCAACGTTTTGCTCCCGTTTGTGTGGAAATCGTTCGCGGCTGTGTGGTCAGCCGATGTTGCGGTATTTTTCGCAATCTACGCATGGAAGgtgagttctttcgtctttctatggttatatttttcttgactcggctatggtgattcag
species | Selaginella moellendorffii |
transcript | EFJ35410 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTGTGTGGTCAGCCGATGTTGCGGTATTTTTCGCAATCTACGCATGGAAG ATGGAGTGGCTCCAACAAAACGAATCCAAAGACAAGCAATAGTATATTAGCEST: gi|169095333|gb|FE499402.1|FE499402
genomic: CTGTGTGGTCAGCCGATGTTGCGGTATTTTTCGCAATCTACGCATGGAAGgtgagttctt ... ggtgattcagATGGAGTGGCTCCAACAAAACGAATCCAAAGACAAGCAATAGTATAT-AGC
EST: CTGTGTGGTCAGCCGATGTTGCGGTATTTTTCGCAATCTACGCATGGAAG ATGGAGTGGCTCCAACAAAACGAATCCAAAGACAAGCAATAGTATATTAGCEST: gi|169068830|gb|FE478523.1|FE478523
genomic: CTGTGTGGTCAGCCGATGTTGCGGTATTTTTCGCAATCTACGCATGGAAGgtgagttctt ... ggtgattcagATGGAGTGGCTCCAACAAAACGAATCCAAAGACAAGCAATAGTATAT-AGC
EST: CTGTGTGGTCAGCCGATGTTGCGGTATTTTTCGCAATCTACGCATGGAAG ATGGAGTGGCTCCAACAAAACGAATCCAAAGACAAGCAATAGTATATTAGC
genomic: CTGTGTGGTCAGCCGATGTTGCGGTATTTTTCGCAATCTACGCATGGAAGgtgagttctt ... ggtgattcagATGGAGTGGCTCCAACAAAACGAATCCAAAGACAAGCAATAGTATAT-AGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTTCCGCTTGTCAACGTTTTGCTCCCGTTTGTGTGGAAATCGTTCGCGGCTGTGTGGTCAGCCGATGTTGCGGTATTTTTCGCAATCTACGCATGGAAGgtgagttctttcgtctttctatggttatatttttcttgactcggctatggtgattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG