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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAATCGATTCTTCCATGTTTGAGGCCGAGGCCGCTGGCCTGGATGCCATGTACCGGACGAACACTGTACGCGTGCCAAAGCCTCTAAAGgtctcacattttctttcttctttctccaactttgtttcatagagttgtcttgtttctttgcttctaccttttttttttcttttctag

Basic information

species Selaginella moellendorffii
transcript EFJ34520
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169050756|gb|FE459902.1|FE459902
EST:     TGGATGCCATGTACCGGACGAACACTGTACGCGTGCCAAAGCCTCTAAAG                         GCAGGGAGTTTGCCCCGAGGAGGCTCTTTCATCATCATGGAATACATCGAG
genomic: TGGATGCCATGTACCGGACGAACACTGTACGCGTGCCAAAGCCTCTAAAGgtctcacatt ... tcttttctagGCAGGGAGTTTGCCCCGAGGAGGCTCTTTCATCATCATGGAATACATCGAG
EST: gi|169021050|gb|FE430659.1|FE430659
EST:     TGGATGCCATGTACCGGACGAACACTGTACGCGTGCCAAAGCCTCTAAAG                         GCAGGGAGTTTGCCCCGAGGAGGCTCTTTCATCATCATGGAATACATCGAG
genomic: TGGATGCCATGTACCGGACGAACACTGTACGCGTGCCAAAGCCTCTAAAGgtctcacatt ... tcttttctagGCAGGGAGTTTGCCCCGAGGAGGCTCTTTCATCATCATGGAATACATCGAG
EST: gi|169050757|gb|FE459903.1|FE459903
EST:     TGGATGCCATGTACCGGACGAACACTGTACGCGTGCCAAAGCCTCTAAAG                         GCAGGGAGTTTGCCCCGAGGAGGCTCTTTCATCATCATGGAATACATCGAG
genomic: TGGATGCCATGTACCGGACGAACACTGTACGCGTGCCAAAGCCTCTAAAGgtctcacatt ... tcttttctagGCAGGGAGTTTGCCCCGAGGAGGCTCTTTCATCATCATGGAATACATCGAG
EST: gi|70670137|gb|DN838714.1|DN838714
EST:     TGGATGCCATGTACCGGACGAACACTGTACGCGTGCCAAAGCCTCTAAAG                         GCAGGGAGTTTGCCCCGAGGAGGCTCTTTCATCATCATGGAATACATCGAG
genomic: TGGATGCCATGTACCGGACGAACACTGTACGCGTGCCAAAGCCTCTAAAGgtctcacatt ... tcttttctagGCAGGGAGTTTGCCCCGAGGAGGCTCTTTCATCATCATGGAATACATCGAG
EST: gi|169021049|gb|FE430658.1|FE430658
EST:     TGGATGCCATGTACCGGACGAACACTGTACGCGTGCCAAAGCCTCTAAAG                         GCAGGGAGTTTGCCCCGAGGAGGCTCTTTCATCATCATGGAATACATCGAG
genomic: TGGATGCCATGTACCGGACGAACACTGTACGCGTGCCAAAGCCTCTAAAGgtctcacatt ... tcttttctagGCAGGGAGTTTGCCCCGAGGAGGCTCTTTCATCATCATGGAATACATCGAG