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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCACCGAAGAGCTGTGCAAGCACTACACCAAGGACTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACAACATCTACGGGCCTTTTGGTACCTGGAAAGgtgagcttagattcttggaacttcctctttcttctcttgctcgaagcttagagtgtgatgggtgactgacaaatcgatctcacag

Basic information

species Selaginella moellendorffii
transcript EFJ34003
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ34003 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: LOC_Os10g28200.1 (Oryza sativa), 5'ss of exon 4
TGCA-CCGAAGAGCTGTGCAAGCACTACACCAAGGACTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACAACATCTACGGGCCTTTTGGTACCTGGAAAGgtg--agcttag---attcttggaacttcctctttcttctcttgctcga--agcttagagtgtgatgggtgactgacaaatcgatctcacag
 ||| | || ||||| |||||||||||||||||||||||||| || ||||||||  |||| |||||||||||||| || || || ||||| || |||||||||   || |||    |||||   |  |       | | ||  | || |   | | |  | |    | |   |  || |              
-GCAACTGAGGAGCTCTGCAAGCACTACACCAAGGACTTTGGCATTGAGTGCCGTGTTGGCCGCTTCCACAACATATATGGCCCCTTTGGAACATGGAAAGgtagaagtttaaccaattctccaagttattgaactgtacttgtactggggcatccttaactcaatttgtcaatggatag-------------

upper sequence: EFJ34003 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: GRMZM2G124434_T01 (Zea mays), 5'ss of exon 4
TGCA-CCGAAGAGCTGTGCAAGCACTACACCAAGGACTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACAACATCTACGGGCCTTTTGGTACCTGGAAAGgtgagctta-----gattcttggaacttcctctttcttctcttgctcgaagcttagagtgtgatgggtgactgacaaatcgatctcacag
 ||| |||| |||||||||||||||||||||||||||||||| |||||||||||  | || |||||||||||||||||||| ||||| || || ||||||||||| | ||       || |  |  ||    || |    || |     || |  |  |  ||||     | ||     |   |||  |||
-GCAACCGAGGAGCTGTGCAAGCACTACACCAAGGACTTTGGCATCGAGTGCCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAGgtgaacctactaccagttttctgggctgtggctgtgaggtcataac--aatccaacggcctgataaaaaaatgctctctttgtctatcag

upper sequence: EFJ34003 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: GRMZM2G138907_T01 (Zea mays), 5'ss of exon 4
TGC-ACCGAAGAGCTGTGCAAGCACTACACCAAGGACTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACAACATCTACGGGCCTTTTGGTACCTGGAAAGgtgagcttagattcttggaact-----tcctctttcttctcttgctcgaagcttagagtgtgatgggtgac----tgacaaatcgatctcacag--------
 || || || ||||||||||||||||| || ||||| ||||| ||||||||||||||||| ||||| |||||||| || || || || || || ||||||||| || ||    ||| | | ||     |  | |  |   ||||  | |  |||     | |  | | ||||    |   |  |  ||  |   |        
-GCGACTGAGGAGCTGTGCAAGCACTATACAAAGGATTTTGGCATCGAGTGCCGGATTGGTCGCTTTCACAACATATATGGTCCCTTCGGCACATGGAAAGgtcagtttgctatctggtagctagtagtattttgccagttctttgttggtgctatcgattttctagatgacgttgtcctatgtttattgcttggcaatatag

upper sequence: EFJ34003 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: GLYMA10G30400.1 (Glycine max), 5'ss of exon 3
TGCACC-GAAGAGCTGTGCAAGCACTACACCAAGGACTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACAACATCTACGGGCCTTTTGGTACCTGGAAAGgtgagcttagattc---ttggaacttcctctttcttctcttgctcgaagcttagagtgtgatgggtgactgacaaatcgat---ctcacag-------------------------------------
 ||| | || ||  | ||||||||||| | |||||| |||||||| |||||||| |||||| | ||||||||||| ||||| |||||||| || ||||||||   | ||         ||| ||  |  | |   ||    |   | ||      |   || | |     | | |  | | |   ||  | |                                     
-GCAACAGAGGAATTATGCAAGCACTATAACAAGGATTTTGGAATTGAGTGCCGCATTGGGAGGTTCCACAACATATACGGTCCTTTTGGGACATGGAAAGgcatgtttttcactgaattgaaagcttttatagttttgactttaccaaatgggtaaattggtagtcattttatattttggtaacctttcggatttaataagtttgtgttttgttgttttgtcatacag

upper sequence: EFJ34003 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: GLYMA20G36740.2 (Glycine max), 5'ss of exon 4
TGCACC-GAAGAGCTGTGCAAGCACTACACCAAGGACTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACAACATCTACGGGCCTTTTGGTACCTGGAAAGgtgagctt-agattc--ttggaacttcctctttcttctcttgctcgaagcttagagtgtgatgggtgactgacaaatcgat---ctcacag-------------------------------------
 ||| | || ||  | ||||||||||| | |||||| |||||||| |||||||| |||||| | ||||||||||| ||||| |||||||| || ||||||||   |||| | | |   ||| ||  |  | |   ||    |   | ||      |   || | |     | |    | | |   ||    |                                     
-GCAACAGAGGAATTATGCAAGCACTATAACAAGGATTTTGGAATTGAGTGCCGCATTGGGAGGTTCCACAACATATACGGTCCTTTTGGGACATGGAAAGgcatgctttacactgaattgaaaacttttatagttttgtctttaccaaatgggtaaattggtagacattttatgttttggtaaccttttggatttaataagtttgtgttttgttgttttgtcatacag

upper sequence: EFJ34003 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: GLYMA19G43400.1 (Glycine max), 5'ss of exon 4
TGCA-CCGAAGAGCTGTGCAAGCACTACACCAAGGACTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACAACATCTACGGGCCTTTTGGTACCTGGAAAGgtgagct-tagatt--cttggaacttcct----ctttcttctcttgctcga-agcttagagtgtgatgggtgactgacaaatcgatctcacag----------------------------
 ||| | |||||| | |||||||| || | |||||| |||||||| ||||||||||||||| | ||||| ||||| || || |||| ||| || ||||| |||  | | | || |   ||| || ||  |     | |  | | |   || | |   ||| |     |   |    | |   | ||| | |||                             
-GCAACAGAAGAGTTATGCAAGCATTATAACAAGGATTTTGGAATTGAGTGCCGGATTGGGAGATTCCATAACATATATGGTCCTTATGGGACATGGAAGGgtatgttcttgactgaattgcaagtttttgcagttgttgtatttgagtcaataaactagtggacattcttttgtagccttttggatttaacaagtttgttgctttgtgttttgtcatatag

upper sequence: EFJ34003 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: Vv05s0020g04510.t01 (Vitis vinifera), 5'ss of exon 4
TGCA-CCGAAGAGCTGTGCAAGCACTACACCAAGGACTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACAACATCTACGGGCCTTTTGGTACCTGGAAAGgtgagctta-------gattc---ttgga----acttcctctttcttctcttgctcgaagcttagagtgtgatgggtgactgacaaatcgatctcacag
 ||| | || ||| | |||||||||||||| |||||||||||||| ||||| || ||||| || ||||| || || || || |||||||| || ||||||||| |||||         ||||   |||||      ||  || |||||  |||    |    |  |    |      ||  |  |   |     | | ||
-GCAACTGAGGAGTTATGCAAGCACTACACTAAGGACTTTGGAATTGAGTGTCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgcaattgtaattccgtttggatgatggtttttccttctttccttttgggtgtttctgttaatacattttgtttctcctttttccattatag

upper sequence: EFJ34003 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: Vv14s0030g02180.t01 (Vitis vinifera), 5'ss of exon 4
TGCACCGAAGAGCTGTGCAAGCACTACACCAAGGACTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACAACATCTACGGGCCTTTTGGTACCTGGAAAGgtgagctt----agattcttggaacttcctctttcttctcttgctcgaagct-tagagtgtgatgggtgactgacaaatcgatctcacag-----------------------------------------------------------------------------
   || || ||| |||| |||||||| ||||| ||||||||||| || || || |||||  | ||||| ||||| || || |||||||| || |||||||||  |||     |  || | |  | || ||   | |  || || |     || | |       |   ||   |   |  | |   || ||                                                                             
GCTACGGAGGAGTTGTGTAAGCACTATACCAAAGACTTTGGAATTGAATGTCGTATTGGAAGATTCCATAACATTTATGGACCTTTTGGAACATGGAAAGgtatgctcttaaaagttatggtgattttctacatgtattcgtgattttgtctcttggtcaccgtcaatggtagg-gagccaagtgcagagaggtttaagcccgctttaaattctaaatcatatttttggatcttagtaattttgtcgttttggtatatttgtcgtag

upper sequence: EFJ34003 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: PP1S98_250V6.1 (Physcomitrella patens), 5'ss of exon 3
TGCACCGAAGAGCTGTGCAAGCACTACACCAAGGACTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACAACATCTACGGGCCTTTTGGTACCTGGAAAGgtgagctta-gattcttggaacttcctc---tttcttctcttgctcgaagcttagagtgtgatgggtgactgacaaatcgatctcacag--------------------------------------------------------------------
  ||| || ||| |||||||||| ||||| |||||||| || || |||||||| |||||||| ||||||||||||||||| || |  || || ||||| ||| |||  |   | | | ||| |||  |   |  | || ||  |     | | | | |   ||  | | ||          |||                                                                         
GCCACAGAGGAGTTGTGCAAGCATTACACAAAGGACTTCGGCATGGAGTGCCGAATTGGGCGTTTCCACAACATCTACGGACCCTACGGAACATGGAAGGgtaagcaaacagtccatcgaaattctccaaatcacctcactgacattgtgttcacatttgcatttgcggcttcttttcttttcttttctttcttgtgttttaagcttccctataggcctgttcattgaagccaagtatgagatttccttctgctcag

upper sequence: EFJ34003 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: PP1S237_14V6.1 (Physcomitrella patens), 5'ss of exon 3
TGCACCGAAGAGCTGTGCAAGCACTACACCAAGGACTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACAACATCTACGGGCCTTTTGGTACCTGGAAAGgtgagcttagattcttggaacttcctctttcttctcttgctcgaagcttagagtgtgatgggtgactgacaaatcgatctcacag--------------------------------------------------------------------------
  |||||| ||| ||||||| || ||||| ||||||||||| || |||||||| ||||| ||||| |||||||| || || || |  || |||||||| ||| ||   ||          |  | || || ||| |||  |  |    |  |   | ||     |  ||   |||  |     ||                                                                          
GCCACCGAGGAGTTGTGCAAACATTACACGAAGGACTTTGGCATGGAGTGCCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacaggagagattcgcc-catcattattcacttttttaatctctttaaacttatctcaaatcgaagtatcattaatgtagtcagatgtacttgtgttttgccttgattctttctcgagggttctgagtaaccattgttgagcttgcctgtacag

upper sequence: EFJ34003 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: PP1S171_56V6.2 (Physcomitrella patens), 5'ss of exon 3
TGCACCGAAGAGCTGTGCAAGCACTACACCAAGGACTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACAACATCTACGGGCCTTTTGGTACCTGGAAAGgtga------gcttagattcttggaacttcctctttcttct-----cttgctcgaagcttaga-gtgtgatgggt-gactgacaaatcgatctcacag--
  ||| || |||||||| | |||||| || |||||||| || || ||||| || ||||| || ||||||||||||||||| || | ||| |||||||| ||| |      |    | | || |  | || | || |||  |     ||   |  ||   || | || ||    |  | | ||  ||||    |       
GCCACGGAGGAGCTGTGTAGGCACTATACAAAGGACTTCGGCATGGAGTGTCGCATTGGTCGTTTCCACAACATCTACGGTCCCTATGGAACCTGGAAGGgtaataattcgtaaggctcctcgtcattttcactatctcttaaaaactgatttcaaatctacatgtttgcaatgcagtcagaagaatcctcattttgagc