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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCACCGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACAACATCTACGGGCCTTTTGGTACCTGGAAAGgtgagcttagattcttggagcttcctttttcttctcttgctcgaagcttagagtgtgatgggtgactgacaaatcgatctcacag

Basic information

species Selaginella moellendorffii
transcript EFJ33664
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ33664 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: LOC_Os10g28200.1 (Oryza sativa), 5'ss of exon 4
TGCA-CCGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACAACATCTACGGGCCTTTTGGTACCTGGAAAGgtg--agcttag---attcttggagcttcctttttcttctcttgctcga--agcttagagtgtgatgggtgactgacaaatcgatctcacag
 ||| | || ||||| |||||||||||||||||||| ||||| || ||||||||  |||| |||||||||||||| || || || ||||| || |||||||||   || |||    |||||   || |       | | ||  | || |   | | |  | |    | |   |  || |              
-GCAACTGAGGAGCTCTGCAAGCACTACACCAAGGACTTTGGCATTGAGTGCCGTGTTGGCCGCTTCCACAACATATATGGCCCCTTTGGAACATGGAAAGgtagaagtttaaccaattctccaagttattgaactgtacttgtactggggcatccttaactcaatttgtcaatggatag-------------

upper sequence: EFJ33664 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: GRMZM2G124434_T01 (Zea mays), 5'ss of exon 4
TGCA-CCGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACAACATCTACGGGCCTTTTGGTACCTGGAAAGgtgagctta-----gattcttggagcttcctttttcttctcttgctcgaagcttagagtgtgatgggtgactgacaaatcgatctcacag
 ||| |||| |||||||||||||||||||||||||| ||||| |||||||||||  | || |||||||||||||||||||| ||||| || || ||||||||||| | ||       || |  | |||     | |    || |     || |  |  |  ||||     | ||     |   |||  |||
-GCAACCGAGGAGCTGTGCAAGCACTACACCAAGGACTTTGGCATCGAGTGCCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAGgtgaacctactaccagttttctgggctgtggctgtgaggtcataac--aatccaacggcctgataaaaaaatgctctctttgtctatcag

upper sequence: EFJ33664 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: GRMZM2G138907_T01 (Zea mays), 5'ss of exon 4
TGC-ACCGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACAACATCTACGGGCCTTTTGGTACCTGGAAAGgtgagcttagattcttggagct-----tcctttttcttctcttgctcgaagcttagagtgtgatgggtgac----tgacaaatcgatctcacag--------
 || || || ||||||||||||||||| || ||||||||||| ||||||||||||||||| ||||| |||||||| || || || || || || ||||||||| || ||    ||| | ||||     |  |||  |   ||||  | |  |||     | |  | | ||||    |   |  |  ||  |   |        
-GCGACTGAGGAGCTGTGCAAGCACTATACAAAGGATTTTGGCATCGAGTGCCGGATTGGTCGCTTTCACAACATATATGGTCCCTTCGGCACATGGAAAGgtcagtttgctatctggtagctagtagtattttgccagttctttgttggtgctatcgattttctagatgacgttgtcctatgtttattgcttggcaatatag

upper sequence: EFJ33664 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: GLYMA10G30400.1 (Glycine max), 5'ss of exon 3
TGCACC-GAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACAACATCTACGGGCCTTTTGGTACCTGGAAAGgtgagcttag-att---cttggagcttcctttttcttctcttgctcgaagcttagagtgtgatgggtgactgacaaatcgat---ctcacag-------------------------------------
 ||| | || ||  | ||||||||||| | ||||||||||||||| |||||||| |||||| | ||||||||||| ||||| |||||||| || ||||||||   | ||   | |    |   |||||   |  | ||  |||   | ||      | | || | |     | | |  | | |   ||  | |                                     
-GCAACAGAGGAATTATGCAAGCACTATAACAAGGATTTTGGAATTGAGTGCCGCATTGGGAGGTTCCACAACATATACGGTCCTTTTGGGACATGGAAAGgcatgtttttcactgaattgaaagcttttatagttttgactttaccaaatgggtaaat-tggtagtcattttatattttggtaacctttcggatttaataagtttgtgttttgttgttttgtcatacag

upper sequence: EFJ33664 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: GLYMA20G36740.2 (Glycine max), 5'ss of exon 4
TGCACC-GAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACAACATCTACGGGCCTTTTGGTACCTGGAAAGgtgagctt-agatt---cttggagcttcctttttcttctcttgctcgaagcttagagtgtgatgggtgactgacaaatcgat---ctcacag-------------------------------------
 ||| | || ||  | ||||||||||| | ||||||||||||||| |||||||| |||||| | ||||||||||| ||||| |||||||| || ||||||||   |||| | | |    |   | |||   |  | || ||||   | ||      | | || | |     | |    | | |   ||    |                                     
-GCAACAGAGGAATTATGCAAGCACTATAACAAGGATTTTGGAATTGAGTGCCGCATTGGGAGGTTCCACAACATATACGGTCCTTTTGGGACATGGAAAGgcatgctttacactgaattgaaaacttttatagttttgtctttaccaaatgggtaaat-tggtagacattttatgttttggtaaccttttggatttaataagtttgtgttttgttgttttgtcatacag

upper sequence: EFJ33664 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: GLYMA19G43400.1 (Glycine max), 5'ss of exon 4
TGCA-CCGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACAACATCTACGGGCCTTTTGGTACCTGGAAAGgtgagct-tagatt--cttggagcttcct----ttttcttctcttgctcga-agcttagagtgtgatgggtgactgacaaatcgatctcacag----------------------------
 ||| | |||||| | |||||||| || | ||||||||||||||| ||||||||||||||| | ||||| ||||| || || |||| ||| || ||||| |||  | | | || |   ||| |  ||  |    || |  | | |   || | |   ||| |     |   |    | |   | ||| | |||                             
-GCAACAGAAGAGTTATGCAAGCATTATAACAAGGATTTTGGAATTGAGTGCCGGATTGGGAGATTCCATAACATATATGGTCCTTATGGGACATGGAAGGgtatgttcttgactgaattgcaagtttttgcagttgttgtatttgagtcaataaactagtggacattcttttgtagccttttggatttaacaagtttgttgctttgtgttttgtcatatag

upper sequence: EFJ33664 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: GLYMA03G40720.1 (Glycine max), 5'ss of exon 4
TGCA-CCGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACAACATCTACGGGCCTTTTGGTACCTGGAAAGgtgagcttagattcttggagcttcctttttcttctcttgc-tcgaagcttagagtgtgatgggtg-------actgacaaatcgatctcacag----------------------------
 ||| | |||||| | |||||||| || | ||||||||||||||| |||||||| |||||| | ||||| ||||| || || |||| ||| || ||||| |||  | |            ||    |||| |   | |||  |  |||     ||  |  ||||            | |   | ||| | |||                             
-GCAACAGAAGAGTTATGCAAGCATTATAACAAGGATTTTGGAATTGAGTGCCGCATTGGGAGATTCCATAACATATATGGTCCTTATGGGACATGGAAGGgtatgttcttgactgcattgcaagtttttgcggttgttgtatttaagtcagtagacttgtgggcattcttttgtagccttttggatttaacaagtttgttgctttgtgttttgtcatatag

upper sequence: EFJ33664 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: Vv05s0020g04510.t01 (Vitis vinifera), 5'ss of exon 4
TGCA-CCGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACAACATCTACGGGCCTTTTGGTACCTGGAAAGgtgagctta-------gattc---ttgga-gcttcctttttcttctcttgctcgaagcttagagtgtgatgggt---gactgacaaatcgatctcacag
 ||| | || ||| | |||||||||||||| ||||| |||||||| ||||| || ||||| || ||||| || || || || |||||||| || ||||||||| |||||         ||||   ||||| | |   |||| ||||| |   |    |  |      | ||   |   |  |  |   |     | | ||
-GCAACTGAGGAGTTATGCAAGCACTACACTAAGGACTTTGGAATTGAGTGTCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgcaattgtaattccgtttggatgatggtttttccttctttccttttgggtgtttctgttaatacattttgtttctcctttttccattatag

upper sequence: EFJ33664 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: PP1S98_250V6.1 (Physcomitrella patens), 5'ss of exon 3
TGCACCGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACAACATCTACGGGCCTTTTGGTACCTGGAAAGgtgagctta-gattcttggagcttcctt---tttcttctcttgctcgaagcttagagtgtgatgggtgactgacaaatcgatctcacag--------------------------------------------------------------------
  ||| || ||| |||||||||| ||||| ||||| || || || |||||||| |||||||| ||||||||||||||||| || |  || || ||||| ||| |||  |   | | | ||  |||      |  | || ||  |     | | | | |   ||  | | ||          |||                                                                         
GCCACAGAGGAGTTGTGCAAGCATTACACAAAGGACTTCGGCATGGAGTGCCGAATTGGGCGTTTCCACAACATCTACGGACCCTACGGAACATGGAAGGgtaagcaaacagtccatcgaaattctccaaatcacctcactgacattgtgttcacatttgcatttgcggcttcttttcttttcttttctttcttgtgttttaagcttccctataggcctgttcattgaagccaagtatgagatttccttctgctcag

upper sequence: EFJ33664 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: PP1S171_56V6.2 (Physcomitrella patens), 5'ss of exon 3
TGCACCGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACAACATCTACGGGCCTTTTGGTACCTGGAAAGgtgagcttagattcttggagcttcctttttcttctcttgctcgaagcttagagtgtgatgggtgactgacaaatcgatctcacag-----------------------
  ||| || |||||||| | |||||| || ||||| || || || ||||| || ||||| || ||||||||||||||||| || | ||| |||||||| ||| |      |||| |   ||| |   |   ||    |        |||| |   ||||     |   |||  |        |||                       
GCCACGGAGGAGCTGTGTAGGCACTATACAAAGGACTTCGGCATGGAGTGTCGCATTGGTCGTTTCCACAACATCTACGGTCCCTATGGAACCTGGAAGGgtaat----aattcgtaaggctcctcgtcattttcactatct----cttaaaaactgatttcaaatctacatgtttgcaatgcagtcagaagaatcctcattttgagc