1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGCGCAAATGCTTCGAGATGGCCTCACGCACTTCCTCGTCACCGGAGATGTATACAGAAGAGATGCTATCGACGCGACACACTATCCAGTTTTCCACCAGgcaagttcgctttttctttttccttgcgtcctgcgtttacagtaagttatcttcgcttcttttggcag
species | Selaginella moellendorffii |
transcript | EFJ33041 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TATACAGAAGAGATGCTATCGACGCGACACACTATCCAGTTTTCCACCAG ATGGAAGGCTTTCGTGTTTTTAGTGAGTCGGAATGGAAAGACGCGGGTTTGEST: gi|169113490|gb|FE515025.1|FE515025
genomic: TATACAGAAGAGATGCTATCGACGCGACACACTATCCAGTTTTCCACCAGgcaagttcgc ... cttttggcagATGGAAGGCTTTCGTGTTTTTAGTGAGTCGGAATGGAAAGACACGGGTTTG
EST: TATACAGAAGAGATGCTATCGACGCGACACACTATCCAGTTTTCCACCAG ATGGAAGGCTTTCGTGTTTTTAGTGAGTCGGAATGGAAAGACGCGGGTTTGEST: gi|169088519|gb|FE491483.1|FE491483
genomic: TATACAGAAGAGATGCTATCGACGCGACACACTATCCAGTTTTCCACCAGgcaagttcgc ... cttttggcagATGGAAGGCTTTCGTGTTTTTAGTGAGTCGGAATGGAAAGACACGGGTTTG
EST: TATACAGAAGAGATGCTATCGACGCGACACACTATCCAGTTTTCCACCAG ATGGAAGGCTTTCGTGTTTTTAGTGAGTCGGAATGGAAAGACGCGGGTTTGEST: gi|169088518|gb|FE491482.1|FE491482
genomic: TATACAGAAGAGATGCTATCGACGCGACACACTATCCAGTTTTCCACCAGgcaagttcgc ... cttttggcagATGGAAGGCTTTCGTGTTTTTAGTGAGTCGGAATGGAAAGACACGGGTTTG
EST: CGCGACACACTATCCAG-TTTCCACCAG ATGGAAGGCTTTCGTGTTTTTAGTGAGTCGGAATGAAAAGACGCGGGTTTG
genomic: CGCGACACACTATCCAGTTTTCCACCAGgcaagttcgc ... cttttggcagATGGAAGGCTTTCGTGTTTTTAGTGAGTCGGAATGGAAAGACACGGGTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCGCAAATGCTTCGAGATGGCCTCACGCACTTCCTCGTCACCGGAGATGTATACAGAAGAGATGCTATCGACGCGACACACTATCCAGTTTTCCACCAGgcaagttcgctttttctttttccttgcgtcctgcgtttacagtaagttatcttcgcttcttttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG