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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACGAGCCTACGGCGGCGTCTCTGGCTTATGGTTTCGACAAGAAAACCAACGAGACCATCTTGGTTTTCGATCTGGGGGGTGGTACATTTGATGTTTCAGgtatacaaaactatttcgctctctatctcgcactggtttgatgatgtcactgtgctgttttgatttag

Basic information

species Selaginella moellendorffii
transcript EFJ32911
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ32911 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: LOC_Os05g23740.1 (Oryza sativa), 5'ss of exon 2
AACGAGCCTACGGCGGCGTCTCTGGCTTATGGTTTCGACAAGAAAACCAACGAGACCATCTTGGTTTTCGATCTGGGGGGTGGTACATTTGATGTTTCAGgtat--acaaaactatttcgctctctatctcg-cactggtt-----tgatgatgtcactgtgctgtt-ttgatttag-----------------------
||||||||||| || || ||| |||| ||||| || || ||||| | ||| ||||||||  | ||||| || ||||| || || ||||||||||||||||||||  |    || ||| || |  || |||   ||||  ||     |     | | |    | | || ||| ||||                        
AACGAGCCTACTGCAGCATCTTTGGCATATGGGTTTGAAAAGAAGAACAATGAGACCATTCTTGTTTTTGACCTGGGAGGAGGCACATTTGATGTTTCAGgtatctatcctacaattacggtgcctttctgaacactatttgcaactacaagttttaaccagttattgttgttttaaccactatttgcatcttttcacgt

upper sequence: EFJ32911 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: Vv18s0041g01230.t01 (Vitis vinifera), 5'ss of exon 2
AACGAGCCTACGGCGGCGTCTCTGGCTTATGGTTTCGACAAGAAAACCAACGAGACCATCTTGGTTTTCGATCTGGGGGGTGGTACATTTGATGTTTCAGgtatacaaaactatttcgctctctatctcgcactggtttgatgatgtca---ctgtgctgttttgatttag------------------------------
|| || ||||| || || || ||||| |||||||| || ||||| |  || || || ||  | || || ||||| || ||||||||||||||||||||||||||  | ||  ||||    |||  | ||   |   |  | ||   ||    ||| |   |||| |   |                               
AATGAACCTACTGCAGCTTCACTGGCATATGGTTTTGAAAAGAAGAATAATGAAACAATTCTTGTATTTGATCTTGGAGGTGGTACATTTGATGTTTCAGgtatg-agaatcattttaagctcattttcatccaaatcaggtggaatcgattctgagaccttttaaggaaataagtttgttaatttttatgccatctcatc