1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTTTGTGATGGGAACAACGGGGGGCGATCGCGAGAAGCTCTTGGATGTAGCAAGAAAATCGGGAACTTACTCTATCATTGCGCCACAGATGGGGAAACAGgtggacttgttcttgttcttttgatcgtttggaggtttagtttctcttttctcag
species | Selaginella moellendorffii |
transcript | EFJ32667 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAAGAAAATCGGGAACTTACTCTATCATTGCGCCACAGATGGGGAAACAG GTCGTCGCTTTCGTAGCAGCAATGGAGATTATGGCTAAGCAATTCCCTGGAEST: gi|169110382|gb|FE512141.1|FE512141
genomic: CAAGAAAATCGGGAACTTACTCTATCATTGCGCCACAGATGGGGAAACAGgtggacttgt ... cttttctcagGTCGTCGCTTTCGTAGCAGCAATGGAGATTATGGCTAAGCAATTCCCTGGA
EST: CAAGAAAATCGGGAACTTACTCTATCATTGCGCCACAGATGGGGAAACAG GTCGTCGCTTTCGTAGCAGCAATGGAGATTATGGCTAAGCAATTCCCTGGA
genomic: CAAGAAAATCGGGAACTTACTCTATCATTGCGCCACAGATGGGGAAACAGgtggacttgt ... cttttctcagGTCGTCGCTTTCGTAGCAGCAATGGAGATTATGGCTAAGCAATTCCCTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTGTGATGGGAACAACGGGGGGCGATCGCGAGAAGCTCTTGGATGTAGCAAGAAAATCGGGAACTTACTCTATCATTGCGCCACAGATGGGGAAACAGgtggacttgttcttgttcttttgatcgtttggaggtttagtttctcttttctcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG