1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AAGGATAAGGAACAAGGAATCATGGCTGGCGACAAGGATGAGGAAGACTCGGCGCTCTTTTATTCCGATCTGATGCCTATGATGgtcttctttcttccactcttatacttcagcttagcatgggaagttttccttgggagaggtagacttagcaacgaaaaagaaaggggtcttcattttattggtggctatctgatagatgtctgatttcgttctcttgcgtttcttacaagaattctagtgctggcttacag
species | Selaginella moellendorffii |
transcript | EFJ32436 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGGATGAGGAAGACTCGGCGCTCTTTTATTCCGATCTGATGCCTATGATG GTTGATGTCGAGAGTACTGTTGGCCCCGACGCATTCTGCCGGTTAGCTCCAEST: gi|169020250|gb|FE428273.1|FE428273
genomic: AGGATGAGGAAGACTCGGCGCTCTTTTATTCCGATCTGATGCCTATGATGgtcttctttc ... tggcttacagGTTGATGTCGAGAGTACTGTTGGCCCCGACGCATTCTGCCGGTTAGCTCCA
EST: AGGATGAGGAAGACTCGGCGCTCTTTTATTCCGATCTGATGCCTATGATG GTTGATGTCGAGAGTACTGTTGGCCCCGACGCATTCTGCCGGTTAGCTCCAEST: gi|169024152|gb|FE435182.1|FE435182
genomic: AGGATGAGGAAGACTCGGCGCTCTTTTATTCCGATCTGATGCCTATGATGgtcttctttc ... tggcttacagGTTGATGTCGAGAGTACTGTTGGCCCCGACGCATTCTGCCGGTTAGCTCCA
EST: AGGATGAGGAAGACTCGGCGCTCTTTTATTCCGATCTGATGCCTATGATG GTTGATGTCGAGAGTACTGTTGGCCCCGACGCATTCTGCCGGTTAGCTCCA
genomic: AGGATGAGGAAGACTCGGCGCTCTTTTATTCCGATCTGATGCCTATGATGgtcttctttc ... tggcttacagGTTGATGTCGAGAGTACTGTTGGCCCCGACGCATTCTGCCGGTTAGCTCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGGATAAGGAACAAGGAATCATGGCTGGCGACAAGGATGAGGAAGACTCGGCGCTCTTTTATTCCGATCTGATGCCTATGATGgtcttctttcttccactcttatacttcagcttagcatgggaagttttccttgggagaggtagacttagcaacgaaaaagaaaggggtcttcattttattggtggctatctgatagatgtctgatttcgttctcttgcgtttcttacaagaattctagtgctggcttacag
- - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - GGAAGA