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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGGACAAGACATCCACGATGCAAGATAATAGTTTCCGCTTCAAAAAACAATCCCGTCGCCTTCAGCAGGCAATGTGGATGAAAAACGCCAAACTCTTgtgagttatacccatagctctcgctctcgatccgatgatcatcgcatctcttttttctagctttgagcatatataacactgacgttcctcttttgtctttgcag

Basic information

species Selaginella moellendorffii
transcript EFJ30194
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ30194 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: PP1S52_233V6.4 (Physcomitrella patens), 5'ss of exon 4
TGGTGGACAAGACATCCACGATGCAAGATAATAGTTTCCGCTTCAAAAAACAATCCCGTCGCCTTCAGCAGGCAATGTGGATGAAAAACGCCAAACTCTTgtgagttatacccatagctctcgctctcgatccgatgatcatcgcatctcttttttctagctttgagcatatataacactgacgttcctcttttgtctttgcag
|||||||||||||| |||| || || |||||||  || |||||||| || || || ||||| || |  || || |||||||| |||||||||||||| |||| |||| |      || ||  |   |  | |  ||  | || |  | | ||| |   ||||    |  | | | |  |  ||||         |  | || ||
TGGTGGACAAGACAGCCACTATTCAGGATAATACCTTTCGCTTCAAGAAGCAGTCACGTCGACTGCGACAAGCCATGTGGATAAAAAACGCCAAACTTTTgtaagttttgtat-cagttcatgagttgcaccacatt-tgatggagtgtgtttctatcagctaattgtgtttctta-gcacacgtgtagaaaccgg-tctgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169070118|gb|FE478017.1|FE478017
EST:     CAATCCCGTCGCCTTCAGCAGGCAATGTGGATGAAAAACGCCAAACTCTT                         GGCTTGCATGACGTGCCTCATCGTCTTCTTGCTCTACATTGTCATCGCAAT
genomic: CAATCCCGTCGCCTTCAGCAGGCAATGTGGATGAAAAACGCCAAACTCTTgtgagttata ... gtctttgcagGGCTTGCATGACGTGCCTCATCGTCTTCTTGCTCTACATTGTCATCGCAAT
EST: gi|169075382|gb|FE483016.1|FE483016
EST:     CAATCCCGTCGCCTTCAGCAGGCAATGTGGATGAAAAACGCCAAACTCTT                         GGCTTGCATGACGTGCCTCATCGTCTTCTTGCTCTACATTGTCATCGCAAT
genomic: CAATCCCGTCGCCTTCAGCAGGCAATGTGGATGAAAAACGCCAAACTCTTgtgagttata ... gtctttgcagGGCTTGCATGACGTGCCTCATCGTCTTCTTGCTCTACATTGTCATCGCAAT
EST: gi|169113126|gb|FE514372.1|FE514372
EST:     CAATCCCGTCGCCTTCAGCAGGCAATGTGGATGAAAAACGCCAAACTCTT                         GGCTTGCATGACGTGCCTCATCGTCTTCTTGCTCTACATTGTCATCGCAAT
genomic: CAATCCCGTCGCCTTCAGCAGGCAATGTGGATGAAAAACGCCAAACTCTTgtgagttata ... gtctttgcagGGCTTGCATGACGTGCCTCATCGTCTTCTTGCTCTACATTGTCATCGCAAT
EST: gi|169075383|gb|FE483017.1|FE483017
EST:     CAATCCCGTCGCCTTCAGCAGGCAATGTGGATGANAAACGCCAAACTCTT                         GGCTTGCATGACGTGCCTCATCGTCTTCTTGCTCTACATTGTCATCGCAAT
genomic: CAATCCCGTCGCCTTCAGCAGGCAATGTGGATGAAAAACGCCAAACTCTTgtgagttata ... gtctttgcagGGCTTGCATGACGTGCCTCATCGTCTTCTTGCTCTACATTGTCATCGCAAT