1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGGTCCTGTTGTGTTCACGTACCAGGATTTGTCTCTAGCCACTGATAGCTTCAGCGAGAGGAACAAGCTTGGACAAGGTGGATTTGGAACTGTTTACAAGgttagttctttattctgtgaagttgcacgcctagaactatcctgtttcctgtag
species | Selaginella moellendorffii |
transcript | EFJ30128 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCAGCGAGAGGAACAAGCTTGGACAAGGTGGATTTGGAACTGTTTACAAG GCCACCTTAAACAATGGCTCGCAAGTAGCAGTGAAGAAGCTCTCCTTGCAGEST: gi|169105350|gb|FE506400.1|FE506400
genomic: TCAGCGAGAGGAACAAGCTTGGACAAGGTGGATTTGGAACTGTTTACAAGgttagttctt ... tttcctgtagGCCACCTTAAACAATGGCTCGCAAGTAGCAGTGAAGAAGCTCTCCTTGCAG
EST: TCAGCAAGAGGAACAAGCTTGGACAAGGTGGATTTGGAACTGTTTACAAG GCCACCTTAAACAATGGCTCGCAAGTAGCAGTGAAGAAGCTCTCCTTGCAGEST: gi|169113083|gb|FE514939.1|FE514939
genomic: TCAGCGAGAGGAACAAGCTTGGACAAGGTGGATTTGGAACTGTTTACAAGgttagttctt ... tttcctgtagGCCACCTTAAACAATGGCTCGCAAGTAGCAGTGAAGAAGCTCTCCTTGCAG
EST: TCAGCAAGAGGAACAAGCTTGGACAAGGTGGATTTGGAACTGTTTACAAG GCCACCTTAAACAATGGCTCGCAAGTAGCAGTGAAGAAGCTCTCCTTGCAGEST: gi|169082013|gb|FE486963.1|FE486963
genomic: TCAGCGAGAGGAACAAGCTTGGACAAGGTGGATTTGGAACTGTTTACAAGgttagttctt ... tttcctgtagGCCACCTTAAACAATGGCTCGCAAGTAGCAGTGAAGAAGCTCTCCTTGCAG
EST: TCAGCAAGAGGAACAAGCTTGGACAAGGTGGATTTGGAACTGTTTACAAG GCCACCTTAAACAATGGCTCGCAAGTAGCAGTGAAGAAGCTCTCCTTGCAG
genomic: TCAGCGAGAGGAACAAGCTTGGACAAGGTGGATTTGGAACTGTTTACAAGgttagttctt ... tttcctgtagGCCACCTTAAACAATGGCTCGCAAGTAGCAGTGAAGAAGCTCTCCTTGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGTCCTGTTGTGTTCACGTACCAGGATTTGTCTCTAGCCACTGATAGCTTCAGCGAGAGGAACAAGCTTGGACAAGGTGGATTTGGAACTGTTTACAAGgttagttctttattctgtgaagttgcacgcctagaactatcctgtttcctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA