1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGTCCAGAGGAGATAAGCGCCATGATCTTGACGAGAATGAAGGAGACGGCCGAGTCATACTTGGGCAAGAAGATCAAGGACGCCGTTGTCACAGTTCCAGgtactcattcatctagttgtttgttttccaaatcatagtttttactgatcttctcgatgggcag
species | Selaginella moellendorffii |
transcript | EFJ29073 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCGTTGTCACAGTTCCAG CGTACTTCAATGACGCACAGAGGCAGGCAACGAAGGATGCCGGTGCCATCGEST: gi|169080680|gb|FE487188.1|FE487188
genomic: CCGTTGTCACAGTTCCAGgtactcattc ... cgatgggcagCGTACTTCAATGACGCACAGAGGCAGGCAACGAAGGATGCCGGTGCCATCG
EST: GGCAAGAAGATCAAGGACGCCGTTGTCACAGTTCCAG CGTACTTCAATGACGCACAGAGGCAGGCAACGAAGGATGCCGGTGCCATCGEST: gi|169115292|gb|FE517008.1|FE517008
genomic: GGCAAGAAGATCAAGGACGCCGTTGTCACAGTTCCAGgtactcattc ... cgatgggcagCGTACTTCAATGACGCACAGAGGCAGGCAACGAAGGATGCCGGTGCCATCG
EST: GCAAGAAGATCAAGGACGCCGTTGTCACAGTTCCAG CGTACTTCAATGACGCACAGAGGCAGGCAACGAAGGATGCCGGTGCCATCGEST: gi|169079294|gb|FE490183.1|FE490183
genomic: GCAAGAAGATCAAGGACGCCGTTGTCACAGTTCCAGgtactcattc ... cgatgggcagCGTACTTCAATGACGCACAGAGGCAGGCAACGAAGGATGCCGGTGCCATCG
EST: CGCCGTTGTCACAGTTCCAG CGTACTTCAATGACGCACAGAGGCAGGCAACGAAGGATGCCGGTGCCATCGEST: gi|169087152|gb|FE493099.1|FE493099
genomic: CGCCGTTGTCACAGTTCCAGgtactcattc ... cgatgggcagCGTACTTCAATGACGCACAGAGGCAGGCAACGAAGGATGCCGGTGCCATCG
EST: CGAGTCATACTTGGGCAAGAAGATCAAGGACGCCGTTGTCACAGTTCCAG CGTACTTCAATGACGCACAGAGGCAGGCAACGAAGGATGCCGGTGCCATCGEST: gi|169034527|gb|FE444574.1|FE444574
genomic: CGAGTCATACTTGGGCAAGAAGATCAAGGACGCCGTTGTCACAGTTCCAGgtactcattc ... cgatgggcagCGTACTTCAATGACGCACAGAGGCAGGCAACGAAGGATGCCGGTGCCATCG
EST: CGAGTCATACTTGGGCAAGAAGATCAAGGACGCCGTTGTCACAGTTCCAG CGTACTTCAATGACGCACAGAGGCAGGCAACGAAGGATGCCGGTGCCATCG
genomic: CGAGTCATACTTGGGCAAGAAGATCAAGGACGCCGTTGTCACAGTTCCAGgtactcattc ... cgatgggcagCGTACTTCAATGACGCACAGAGGCAGGCAACGAAGGATGCCGGTGCCATCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTCCAGAGGAGATAAGCGCCATGATCTTGACGAGAATGAAGGAGACGGCCGAGTCATACTTGGGCAAGAAGATCAAGGACGCCGTTGTCACAGTTCCAGgtactcattcatctagttgtttgttttccaaatcatagtttttactgatcttctcgatgggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA