1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AAGTGTGCGTTTGACTCCCAATCAAAATCTGATTCTATGTGACATTCGACCTTCTTGGAAGTCACGGATTACAAAGACACTTGCTCAAGTGGGACTGCTGgtatgctgatttgttatggtgagctcttttctcatgacaaacattgcag
species | Selaginella moellendorffii |
transcript | EFJ27223 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTTCTTGGAAGTCACGGATTACAAAGACACTTGCTCAAGTGGGACTGCTG GCCCCTCGTCACATAGATAGTCTTAACTTGACGTCCATGGCATGTCCAGCAEST: gi|169037587|gb|FE446328.1|FE446328
genomic: CTTCTTGGAAGTCACGGATTACAAAGACACTTGCTCAAGTGGGACTGCTGgtatgctgat ... aacattgcagGCCCCTCGTCACATAGATAGTCTTAACTTGTCGTCCATGGCATGTCCAGCA
EST: CTTCTTGGAAGTCACGGATTACAAAGACACTTGCTCAAGTGGGACTGCTG GCCCCTCGTCACATAGATAGTCTTAACTTGACGTCCATGGCATGTCCAGCAEST: gi|169058053|gb|FE463961.1|FE463961
genomic: CTTCTTGGAAGTCACGGATTACAAAGACACTTGCTCAAGTGGGACTGCTGgtatgctgat ... aacattgcagGCCCCTCGTCACATAGATAGTCTTAACTTGTCGTCCATGGCATGTCCAGCA
EST: CTTCTTGGAAGTCACGGATTACAAAGACACTTGCTCAAGTGGGACTGCTG GCCCCTCGTCACATAGATAGTCTTAACTTGACGTCCATGGCATGTCCAGCAEST: gi|169021602|gb|FE428624.1|FE428624
genomic: CTTCTTGGAAGTCACGGATTACAAAGACACTTGCTCAAGTGGGACTGCTGgtatgctgat ... aacattgcagGCCCCTCGTCACATAGATAGTCTTAACTTGTCGTCCATGGCATGTCCAGCA
EST: CTTCTTGGAAGTCACGGATTACAAAGACACTTGCTCAAGTGGGACTGCTG GCCCCTCGTCACATAGATAGTCTTAACTTGTCGTCCATGGCATGTCCAGCA
genomic: CTTCTTGGAAGTCACGGATTACAAAGACACTTGCTCAAGTGGGACTGCTGgtatgctgat ... aacattgcagGCCCCTCGTCACATAGATAGTCTTAACTTGTCGTCCATGGCATGTCCAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGTGTGCGTTTGACTCCCAATCAAAATCTGATTCTATGTGACATTCGACCTTCTTGGAAGTCACGGATTACAAAGACACTTGCTCAAGTGGGACTGCTGgtatgctgatttgttatggtgagctcttttctcatgacaaacattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG