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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGACTTGGGCAGCAACAATCTTGCAAAGCTCGAATGTTGCCTGGGAATACGGTGTCAGTGGCCCGTTCTGGTATGCCAGTGGGGCTACCATTCAGgtaagctagatagttgactggttgagagatcacagcatggttttctatttgcag

Basic information

species Selaginella moellendorffii
transcript EFJ26403
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ06356 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: GLYMA04G14790.1 (Glycine max), 5'ss of exon 3
TGGACTTGGGCAGCAACAATCTTGCAAAGCTCGAATGTTGCCTGGGAATACGGTGTCAGTGGCCCGTTCTGGTATGCCAGTGGGGCTACCATTCAGgtaagctagatagttgactggttgagagatcacagcatggtt--ttctatttgcag-------------------------
||||| ||||| || |||||| |||||||||| |||||||| ||||| || || || ||||| || ||||||||||| |||||||| ||||| |||| | |     ||  |  ||  ||   | ||  ||   |  ||  |||||  |   |                         
TGGACATGGGCTGCTACAATCCTGCAAAGCTCTAATGTTGCATGGGAGTATGGAGTTAGTGGACCTTTCTGGTATGCTAgtggggccaccatccaggcatgaacctta--tatctccttagaatatagcaatttttttccttctaaattttgatatattgaaatttggaaaaggaag

upper sequence: EFJ06356 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: Vv02s0033g01370.t01 (Vitis vinifera), 5'ss of exon 3
TGGACTTGGGCAGCAACAATCTTGCAAAGCTCGAATGTTGCCTGGGAATACGGTGTCAGTGGCCCGTTCTGGTATGCCAGTGGGGCTACCATTCAGgtaagctaga----tagttgactggttgagagat---cacagcatggttttctatttgcag----------------
||||||||||| || ||||||||||||||||| ||||| || ||| | || || || || ||||| ||||||||||||||||| |||||||| |||| | | |  |    || ||   |  |  |    |   | ||   | |     |   | |||                
TGGACTTGGGCTGCCACAATCTTGCAAAGCTCCAATGTAGCATGGCAGTATGGAGTTAGCGGCCCTTTCTGGTATGCCAGTGGAGCTACCATCCAGgcatgttcaagctataatttcttcttctatgttttctctcaatctaggaaaatgactccagtgatgctaatcaatag