1 5' 3' | 2 5' 3' | 3 5' 3' |
GCGTTTGATGGACGAGCCATTGGTCTCGGCCATCGATCAAGTAAACGTGCATACTTACATCAACTTCGTGACGAGAGAAGAGACTGCAAGGAGGAAAGAGgtagagaaagaagcgcttcttttttgttgggcgatctaagtgtttcggcttttcag
species | Selaginella moellendorffii |
transcript | EFJ26147 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATACTTACATCAACTTCGTGACGAGAGAAGAGACTGCAAGGAGGAAAGAG GTAAGGCAGGCTGTTAGCTCTATTGGAAAGAGACTCTGGATGTCGGAATACEST: gi|169063313|gb|FE472147.1|FE472147
genomic: ATACTTACATCAACTTCGTGACGAGAGAAGAGACTGCAAGGAGGAAAGAGgtagagaaag ... ggcttttcagGTAAGGCAGGCTGTTAGCTCTATTGGAAAGAGACTCTGGATGTCGGAATAC
EST: ATACTTACATCAACTTCGTGACGAGAGAAGAGACTGCAAGGAGGAAAGAG GTAAGGCAGGCTGTTAGCTCTATTGGAAAGAGACTCTGGATGTCGGAATACEST: gi|169073339|gb|FE481103.1|FE481103
genomic: ATACTTACATCAACTTCGTGACGAGAGAAGAGACTGCAAGGAGGAAAGAGgtagagaaag ... ggcttttcagGTAAGGCAGGCTGTTAGCTCTATTGGAAAGAGACTCTGGATGTCGGAATAC
EST: ATACTTACATCAACTTCGTGACGAGAGAAGAGACTGCAAGGAGGAAAGAG GTAAGGCAGGCTGTTAGCTCTATTGGAAAGAGACTCTGGATGTCGGAATACEST: gi|169040147|gb|FE447068.1|FE447068
genomic: ATACTTACATCAACTTCGTGACGAGAGAAGAGACTGCAAGGAGGAAAGAGgtagagaaag ... ggcttttcagGTAAGGCAGGCTGTTAGCTCTATTGGAAAGAGACTCTGGATGTCGGAATAC
EST: ATACTTACATCAACTTCGTGACGAGAGAAGAGACTGCAAGGAGGATAGAG GTAAGGCAGGCTGTTAGCTCTATTGGAAAGAGACTCTGGATGTCGGAATACEST: gi|169066673|gb|FE473284.1|FE473284
genomic: ATACTTACATCAACTTCGTGACGAGAGAAGAGACTGCAAGGAGGAAAGAGgtagagaaag ... ggcttttcagGTAAGGCAGGCTGTTAGCTCTATTGGAAAGAGACTCTGGATGTCGGAATAC
EST: ATACTTACATCAACTTCGTGACGAGAGAAGAGACTGCAAGGAGGAAAGAG GTAAGGCAGGCTGTTAGCTCTATTGGAAAGAGACTCTGGATGTCGGAATACEST: gi|169066672|gb|FE473283.1|FE473283
genomic: ATACTTACATCAACTTCGTGACGAGAGAAGAGACTGCAAGGAGGAAAGAGgtagagaaag ... ggcttttcagGTAAGGCAGGCTGTTAGCTCTATTGGAAAGAGACTCTGGATGTCGGAATAC
EST: ATACTTACATCAACTTCGTGACGAGAGAAGAGACTGCAAGGAGGAAAGAG GTAAGGCAGGCTGTTAGCTCTATTGGAAAGAGACTCTGGATGTCGGAATACEST: gi|169077435|gb|FE485919.1|FE485919
genomic: ATACTTACATCAACTTCGTGACGAGAGAAGAGACTGCAAGGAGGAAAGAGgtagagaaag ... ggcttttcagGTAAGGCAGGCTGTTAGCTCTATTGGAAAGAGACTCTGGATGTCGGAATAC
EST: ATACTTACATCAACTTCGTGACGAGAGAAGAGACTGCAAGGAGGAAAGAG GTAAGGCAGGCTGTTAGCTCTATTGGAAAGAGACTCTGGATGTCGGAATACEST: gi|169096966|gb|FE498409.1|FE498409
genomic: ATACTTACATCAACTTCGTGACGAGAGAAGAGACTGCAAGGAGGAAAGAGgtagagaaag ... ggcttttcagGTAAGGCAGGCTGTTAGCTCTATTGGAAAGAGACTCTGGATGTCGGAATAC
EST: ATACTTACATCAACTTCGTGACGAGAGAAGAGACTGCAAGGAGGAAAGAG GTAAGGCAGGCTGTTAGCTCTATTGGAAAGAGACTCTGGATGTCGGAATACEST: gi|169040148|gb|FE447069.1|FE447069
genomic: ATACTTACATCAACTTCGTGACGAGAGAAGAGACTGCAAGGAGGAAAGAGgtagagaaag ... ggcttttcagGTAAGGCAGGCTGTTAGCTCTATTGGAAAGAGACTCTGGATGTCGGAATAC
EST: ATACTTACATCAACTTCGTGACGAGAGAAGAGACTGCAAGGAGGAAAGAG GTAAGGCAGGCTGTTAGCTCTATTGGAAAGAGACTCTGGATGTCGGAATACEST: gi|169111976|gb|FE512227.1|FE512227
genomic: ATACTTACATCAACTTCGTGACGAGAGAAGAGACTGCAAGGAGGAAAGAGgtagagaaag ... ggcttttcagGTAAGGCAGGCTGTTAGCTCTATTGGAAAGAGACTCTGGATGTCGGAATAC
EST: ATACTTACATCAACTTCGTGACGAGAGAAGAGACTGCAAGGAGGAAAGAG GTAAGGCAGGCTGTTAGCTCTATTGGAAAGAGACTCTGGATGTCGGAATAC
genomic: ATACTTACATCAACTTCGTGACGAGAGAAGAGACTGCAAGGAGGAAAGAGgtagagaaag ... ggcttttcagGTAAGGCAGGCTGTTAGCTCTATTGGAAAGAGACTCTGGATGTCGGAATAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGTTTGATGGACGAGCCATTGGTCTCGGCCATCGATCAAGTAAACGTGCATACTTACATCAACTTCGTGACGAGAGAAGAGACTGCAAGGAGGAAAGAGgtagagaaagaagcgcttcttttttgttgggcgatctaagtgtttcggcttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA