1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTTCTTGTAAACTACGCTAGATCATCAAAAGAGGCCGAGGATGTTGCCTCGCAGgtatcgttaggtgattttttgtttttcttgtggaaaatggtgttttactgtag
species | Selaginella moellendorffii |
transcript | EFJ26070 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGTAAACTACGCTAGATCATCAAAAGAGGCCGAGGATGTTGCCTCGCAG ATCGAAGAACTTGGTGGCTCGGCTCTCGTTTATGGTGGAGATGTATCGAAGEST: gi|169115518|gb|FE518027.1|FE518027
genomic: TTGTAAACTACGCTAGATCATCAAAAGAGGCCGAGGATGTTGCCTCGCAGgtatcgttag ... tttactgtagATCGAAGAACTTGGTGGCTCGGCTCTCGTTTATGGTGGAGATGTATCGAAG
EST: TTGTAAACTACGCTAGATCATCAAAAGAGGCCGAGGATGTTGCCTCGCAG ATCGAAGAACTTGGTGGCTCGGCTCTCGTTTATGGTGGAGATGTATCGAAGEST: gi|169105718|gb|FE508484.1|FE508484
genomic: TTGTAAACTACGCTAGATCATCAAAAGAGGCCGAGGATGTTGCCTCGCAGgtatcgttag ... tttactgtagATCGAAGAACTTGGTGGCTCGGCTCTCGTTTATGGTGGAGATGTATCGAAG
EST: TTGTAAACTACGCTAGATCATCAAAAGAGGCCGAGGATGTTGCCTCGCAG ATCGAAGAACTTGGTGGCTCGGCTCTCGTTTATGGTGGAGATGTATCGAAGEST: gi|169066404|gb|FE474627.1|FE474627
genomic: TTGTAAACTACGCTAGATCATCAAAAGAGGCCGAGGATGTTGCCTCGCAGgtatcgttag ... tttactgtagATCGAAGAACTTGGTGGCTCGGCTCTCGTTTATGGTGGAGATGTATCGAAG
EST: TTGTAAACTACGCTAGATCATCAAAAGAGGCCGAGGATGTTGCCTCGCAG ATCGAAGAACTTGGTGGCTCGGCTCTCGTTTATGGTGGAGATGTATCGAAGEST: gi|70671166|gb|DN839743.1|DN839743
genomic: TTGTAAACTACGCTAGATCATCAAAAGAGGCCGAGGATGTTGCCTCGCAGgtatcgttag ... tttactgtagATCGAAGAACTTGGTGGCTCGGCTCTCGTTTATGGTGGAGATGTATCGAAG
EST: TTGTAAACTACGCTAGATCATCAAAAGAGGCCGAGGATGTTGCCTCGCAG ATCGAAGAACTTGGTGGCTCGGCTCTCGTTTATGGTGGAGATGTATCGAAGEST: gi|169105719|gb|FE508485.1|FE508485
genomic: TTGTAAACTACGCTAGATCATCAAAAGAGGCCGAGGATGTTGCCTCGCAGgtatcgttag ... tttactgtagATCGAAGAACTTGGTGGCTCGGCTCTCGTTTATGGTGGAGATGTATCGAAG
EST: TTGTAAACTACGCTAGATCATCAAAAGAGGCCGAGGATGTTGCCTCGCAG ATCGAAGAACTTGGTGGCTCGGCTCTCGTTTATGGTGGAGATGTATCGAAG
genomic: TTGTAAACTACGCTAGATCATCAAAAGAGGCCGAGGATGTTGCCTCGCAGgtatcgttag ... tttactgtagATCGAAGAACTTGGTGGCTCGGCTCTCGTTTATGGTGGAGATGTATCGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCTTGTAAACTACGCTAGATCATCAAAAGAGGCCGAGGATGTTGCCTCGCAGgtatcgttaggtgattttttgtttttcttgtggaaaatggtgttttactgtag
- - - - - - - - - AGATCA
- - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - AGGATG